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Author Details

Qiongyu Li
Quantitative Biosciences Institute (QBI), University of California san francisco
2012
62
22
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37090610A proximity proteomics pipeline with improved reproducibility and throughput.bioRxiv2024
36936941The colonic interleukin-19 aggravates the dextran sodium sulfate/stress-induced comorbidities due to colitis and anxiety.Front Immunol2023
37513070A Wrinkling and Etching-Assisted Regrowth Strategy for Large-Area Bilayer Graphene Preparation on Cu.Nanomaterials (Basel)2023
36972780PPARγ/Adiponectin axis attenuates methamphetamine-induced conditional place preference via the hippocampal AdipoR1 signaling pathway.Prog Neuropsychopharmacol Biol Psychiatry2023
37036545Role of Hippocampal miR-132-3p in Modifying the Function of Protein Phosphatase Mg2+/Mn2+-dependent 1 F in Depression.Neurochem Res2023
34871711Effect of PPM1F in dorsal raphe 5-HT neurons in regulating methamphetamine-induced conditioned place preference performance in mice.Brain Res Bull2022
35709892Identification of potential therapeutic and diagnostic characteristics of Alzheimer disease by targeting the miR-132-3p/FOXO3a-PPM1F axis in APP/PS1 mice.Brain Res2022
35685794A proximity labeling method for protein-protein interactions on cell membrane.Chem Sci2022
35899203Spatial Transcriptomics for Tumor Heterogeneity Analysis.Front Genet2022
36301681Synthesis of graphene nanomesh with symmetrical fractal patterns via hydrogen-free chemical vapor deposition.Nanotechnology2022
34023725New insights into the mechanism of hepatocyte apoptosis induced by typical organophosphate ester: An integrated in vitro and in silico approach.Ecotoxicol Environ Saf2021
33770218Diet affects glycosylation of serum proteins in women at risk for cardiometabolic disease.Eur J Nutr2021
33745117PPM1F in Dentate Gyrus Modulates Anxiety-Related Behaviors by Regulating BDNF Expression via AKT/JNK/p-H3S10 Pathway.Mol Neurobiol2021
33537694Two-dimensional metal-free boron chalcogenides B<sub>2</sub>X<sub>3</sub> (X = Se and Te) as photocatalysts for water splitting under visible light.Nanoscale2021
33639208PPM1F in hippocampal dentate gyrus regulates the depression-related behaviors by modulating neuronal excitability.Exp Neurol2021
34900345Cryptotanshinone ameliorates CUS-induced depressive-like behaviors in mice.Transl Neurosci2021
34403816Glycan biomarkers of autoimmunity and bile acid-associated alterations of the human glycome: Primary biliary cirrhosis and primary sclerosing cholangitis-specific glycans.Clin Immunol2021
34132764Analysis of site-specific glycan profiles of serum proteins in patients with multiple sclerosis or neuromyelitis optica spectrum disorder-a pilot study.Glycobiology2021
34257876Glycan-protein cross-linking mass spectrometry reveals sialic acid-mediated protein networks on cell surfaces.Chem Sci2021
32353859A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.Nature2020
34094216Determination of the glycoprotein specificity of lectins on cell membranes through oxidative proteomics.Chem Sci2020
33060657A site-specific map of the human plasma glycome and its age and gender-associated alterations.Sci Rep2020
33003435High Mannose N-Glycans Promote Migration of Bone-Marrow-Derived Mesenchymal Stromal Cells.Int J Mol Sci2020
32575091Performance of chemically synthesized Mn<sub>3</sub>O<sub>4</sub>/rGO nanocomposite for electrochemical supercapacitor: a cost-effective high-performance electrode.Nanotechnology2020
32681150Comprehensive structural glycomic characterization of the glycocalyxes of cells and tissues.Nat Protoc2020
32597006IGFBP-4 enhances VEGF-induced angiogenesis in a mouse model of myocardial infarction.J Cell Mol Med2020
32677637Prediction of room-temperature ferromagnetism in a two-dimensional direct band gap semiconductor.Nanoscale2020
32645325The Global Phosphorylation Landscape of SARS-CoV-2 Infection.Cell2020
32213588Metastasis of cholangiocarcinoma is promoted by extended high-mannose glycans.Proc Natl Acad Sci U S A2020
30387814Ligustrazine inhibits platelet activation via suppression of the Akt pathway.Int J Mol Med2019
31360427Identification of potential sialic acid binding proteins on cell membranes by proximity chemical labeling.Chem Sci2019
31588266Unveiling the metabolic fate of monosaccharides in cell membranes with glycomic and glycoproteomic analyses.Chem Sci2019
31412618Characterization of Cell Glycocalyx with Mass Spectrometry Methods.Cells2019
31180555Synergistic effect of kaempferol and 5â¿¿fluorouracil on the growth of colorectal cancer cells by regulating the PI3K/Akt signaling pathway.Mol Med Rep2019
31261646Hydrogen Induced Etching Features of Wrinkled Graphene Domains.Nanomaterials (Basel)2019
31316527Effects of N-Glycosylation on the Structure, Function, and Stability of a Plant-Made Fc-Fusion Anthrax Decoy Protein.Front Plant Sci2019
31545048Site-Specific Glycoprofiles of HDL-Associated ApoE are Correlated with HDL Functional Capacity and Unaffected by Short-Term Diet.J Proteome Res2019
30862720EBF1-Mediated Upregulation of Ribosome Assembly Factor PNO1 Contributes to Cancer Progression by Negatively Regulating the p53 Signaling Pathway.Cancer Res2019
30882205Site-Specific Glycosylation Quantitation of 50 Serum Glycoproteins Enhanced by Predictive Glycopeptidomics for Improved Disease Biomarker Discovery.Anal Chem2019
30784931Alkaloids from Nelumbinis Plumula (AFNP) ameliorate aortic remodeling via RhoA/ROCK pathway.Biomed Pharmacother2019
29115462Hedyotis diffusa Willd inhibits proliferation and induces apoptosis of 5⿿FU resistant colorectal cancer cells by regulating the PI3K/AKT signaling pathway.Mol Med Rep2018
30149567Synthesis of Amorphous Carbon Film in Ethanol Inverse Diffusion Flames.Nanomaterials (Basel)2018
29553244Mass Spectrometry Approaches to Glycomic and Glycoproteomic Analyses.Chem Rev2018
29463060Chitin Oligosaccharide Modulates Gut Microbiota and Attenuates High-Fat-Diet-Induced Metabolic Syndrome in Mice.Mar Drugs2018
29659495Transient Recombinant Protein Production in Glycoengineered <i>Nicotiana benthamiana</i> Cell Suspension Culture.Int J Mol Sci2018
29796594Streptococcal Siglec-like adhesins recognize different subsets of human plasma glycoproteins: implications for infective endocarditis.Glycobiology2018
29562594Glycoform Modification of Secreted Recombinant Glycoproteins through Kifunensine Addition during Transient Vacuum Agroinfiltration.Int J Mol Sci2018
29049885Recent Advances in the Mass Spectrometry Methods for Glycomics and Cancer.Anal Chem2018
28920396[Inhibition of chitin oligosaccharide on dyslipidemia and the potential molecular mechanism exploration].Sheng Wu Gong Cheng Xue Bao2017
29278394Antrodia cinnamomea Oligosaccharides Suppress Lipopolysaccharide-Induced Inflammation through Promoting O-GlcNAcylation and Repressing p38/Akt Phosphorylation.Molecules2017
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Collaborators

Emanual Maverakis
Co-authored papers 5
Alexander A Merleev
Co-authored papers 3
Guillaume Luxardi
Co-authored papers 3
Ruth H??ttenhain
Quantitative Biosciences Institute (QBI), University of California san francisco
Co-authored papers 3
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 3
Jiewei Xu
Quantitative Biosciences Institute (QBI), University of California san francisco
Co-authored papers 3
Danish Memon
European Bioinformatics Institute
Co-authored papers 2
Bjoern Meyer
Institut Pasteur
Co-authored papers 2
Helene Foussard
Quantitative Biosciences Institute (QBI), University of California san francisco
Co-authored papers 2
Gwendolyn M Jang
Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes
Co-authored papers 2
Danielle L Swaney
J. David Gladstone Institutes
Co-authored papers 2
Joseph B Hiatt
Fred Hutchinson Cancer Center
Co-authored papers 2
Claudia Hernandez-Armenta
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Lisa Miorin
Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Margaret Soucheray
J. David Gladstone Institutes
Co-authored papers 2
Kirsten Obernier (CM4AI)
University of California San Francisco
Co-authored papers 2
James E Melnyk
University of California San Francisco
Co-authored papers 2
Jyoti Batra
J. David Gladstone Institutes
Co-authored papers 2
Brian K Shoichet
Department of Pharmaceutical Chemistry, University of California san francisco
Co-authored papers 2
Alicia L Richards
University of Wisconsin-Madison
Co-authored papers 2
Marco Vignuzzi
Quantitative Biosciences Institute (QBI) Coronavirus Research Group (QCRG)
Co-authored papers 2
Kevan M Shokat
University of California San Francisco
Co-authored papers 2
Kris M White
Quantitative Biosciences Institute (QBI) Coronavirus Research Group (QCRG)
Co-authored papers 2
Robyn M Kaake
J. David Gladstone Institutes
Co-authored papers 2
Beril Tutuncuoglu
University of California san francisco
Co-authored papers 2
Mark von Zastrow
University of California san francisco
Co-authored papers 2
Ying Shi
Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences
Co-authored papers 2
David E Gordon
Emory University
Co-authored papers 2
Alina I Marusina
Co-authored papers 2
Yiming Cai
Institute of Mental Health and Woodbridge Hospital
Co-authored papers 2
Release 1.2