Author details

Full Name

Srikar Chamala

Affiliation

USC/Children's Hospital Los Angeles Los Angeles California USA.

ORCID

Career Start Year

2007

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36688082	Analysis of <i>AVPR1A</i>, thermal and pressure pain thresholds, and stress in sickle cell disease.	Front Pain Res (Lausanne)	2023
37719179	Automated HL7v2 LRI informatics framework for streamlining genomics-EHR data integration.	J Pathol Inform	2023
37860057	Sync for Genes Phase 5: Computable artifacts for sharing dynamically annotated FHIR-formatted genomic variants.	Learn Health Syst	2023
37425649	Transcriptional Profile of Human Pancreatic Acinar Ductal Metaplasia.	Gastro Hep Adv	2023
37237059	A genomic data archive from the Network for Pancreatic Organ donors with Diabetes.	Sci Data	2023
36548217	Introducing HL7 FHIR Genomics Operations: a developer-friendly approach to genomics-EHR integration.	J Am Med Inform Assoc	2023
36471780	Maintaining informatics training learning outcomes with a COVID-19 era shift to a fully online flipped course.	J Pathol Inform	2023
36540993	Development and application of a computable genotype model in the GA4GH Variation Representation Specification.	Pac Symp Biocomput	2023
35285297	HUMAN STUDY <i>COMT</i> and <i>DRD3</i> haplotype-associated pain intensity and acute care utilization in adult sickle cell disease.	Exp Biol Med (Maywood)	2022
35928983	The vaginal microbiome is associated with endometrial cancer grade and histology.	Cancer Res Commun	2022
36055991	Pharmacological inhibition and reversal of pancreatic acinar ductal metaplasia.	Cell Death Discov	2022
33478573	Integrative analyses of TEDDY Omics data reveal lipid metabolism abnormalities, increased intracellular ROS and heightened inflammation prior to autoimmunity for type 1 diabetes.	Genome Biol	2021
33653260	vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration.	BMC Bioinformatics	2021
33871606	Reverse Plasticity Underlies Rapid Evolution by Clonal Selection within Populations of Fibroblasts Propagated on a Novel Soft Substrate.	Mol Biol Evol	2021
33499867	Building a precision oncology workforce by multidisciplinary and case-based learning.	BMC Med Educ	2021
34900682	An Assessment of Ovarian Cancer Histotypes Across the African Diaspora.	Front Oncol	2021
34524835	Digital Pathology in Cameroon.	JCO Glob Oncol	2021
34189259	Pathology Informatics and Robotics Strategies for Improving Efficiency of COVID-19 Pooled Testing.	Acad Pathol	2021
33940603	Wrong Tissue in Block.	Am J Clin Pathol	2021
34213803	The Hologic Aptima SARS-CoV-2 assay enables high ratio pooling saving reagents and improving turnaround time.	J Clin Lab Anal	2021
33419759	Genetic Composition and Autoantibody Titers Model the Probability of Detecting C-Peptide Following Type 1 Diabetes Diagnosis.	Diabetes	2021
32285629	Disparities in Pancreatic Ductal Adenocarcinoma-The Significance of Hispanic Ethnicity, Subgroup Analysis, and Treatment Facility on Clinical Outcomes.	Cancer Med	2020
33623889	Informatics driven quality improvement in the modern histology lab.	JAMIA Open	2020
33754137	Optimizing COVID-19 testing capabilities and clinical management using pathology informatics.	JAMIA Open	2020
32634859	Histological validation of a type 1 diabetes clinical diagnostic model for classification of diabetes.	Diabet Med	2020
32284963	Informatics Training for Pathology Practice and Research in the Digital Era.	Acad Pathol	2020
27801761	Endometrial Thickness as Measured by Transvaginal Ultrasound and the Corresponding Histopathologic Diagnosis in Women With Postmenopausal Bleeding.	Int J Gynecol Pathol	2017
28390909	Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae).	Mol Phylogenet Evol	2017
27905489	The mammalian LINC complex regulates genome transcriptional responses to substrate rigidity.	Sci Rep	2016
25909041	MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes.	Appl Plant Sci	2015
26068575	A Consensus Genetic Map for Pinus taeda and Pinus elliottii and Extent of Linkage Disequilibrium in Two Genotype-Phenotype Discovery Populations of Pinus taeda.	G3 (Bethesda)	2015
25859541	Genome-wide identification of evolutionarily conserved alternative splicing events in flowering plants.	Front Bioeng Biotechnol	2015
25309837	Primers for low-copy nuclear genes in Metrosideros and cross-amplification in Myrtaceae.	Appl Plant Sci	2014
23394592	Potential use of low-copy nuclear genes in DNA barcoding: a comparison with plastid genes in two Hawaiian plant radiations.	BMC Evol Biol	2013
25202552	Primers for low-copy nuclear genes in the Hawaiian endemic Clermontia (Campanulaceae) and cross-amplification in Lobelioideae.	Appl Plant Sci	2013
24357320	Assembly and validation of the genome of the nonmodel basal angiosperm Amborella.	Science	2013
24061528	Validation of reference transcripts in strawberry (Fragaria spp.).	Mol Genet Genomics	2013
22264605	Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin.	Curr Biol	2012
22268220	Next-generation sequencing and genome evolution in allopolyploids.	Am J Bot	2012
21619600	A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure.	Genome Biol	2011
20331776	Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping.	Mol Ecol	2010
18048316	Evolutionary selective pressure on three mitochondrial SNPs is consistent with their influence on metabolic efficiency in Pima Indians.	Int J Bioinform Res Appl	2007

1 - 42 of 42

Bernard J Pope

University of Melbourne, The University of Melbourne

Career Start Year 2011

Number of shared co-authors 0

Serghei Mangul

School of Pharmacy, University of Southern California

Career Start Year 2011

Number of shared co-authors 0

Jeremy Goecks

Oregon Health & Science University

Career Start Year 2010

Number of shared co-authors 3

Erin L Crowgey

Nemours Children's Hospital Delaware

Career Start Year 2009

Number of shared co-authors 2

Kathleen M Fisch

Center for Computational Biology and Bioinformatics, University of California

Career Start Year 2009

Number of shared co-authors 0

Jihoon Kim

university of california san diego

Career Start Year 2009

Number of shared co-authors 1

Iman Hajirasouliha

Institute for Computational Biomedicine

Career Start Year 2008

Number of shared co-authors 1

Joshua W K Ho

The University of Hong Kong

Career Start Year 2006

Number of shared co-authors 0

Christopher E Mason

Feil Family Brain and Mind Research Institute.

Career Start Year 2004

Number of shared co-authors 5

Robert Sebra

Icahn School of Medicine at Mount Sinai

Career Start Year 2004

Number of shared co-authors 0

Morris A Swertz

University of Groningen, University Medical Center Groningen

Career Start Year 2004

Number of shared co-authors 1

Lachlan J M Coin

The Peter Doherty Institute for Infection and Immunity, The University of Melbourne

Career Start Year 2003

Number of shared co-authors 0

Robert L Grossman

University of Chicago

Career Start Year 2003

Number of shared co-authors 10

Brad A Chapman

Harvard T.H. Chan School of Public Health

Career Start Year 2003

Number of shared co-authors 0

Christie L Kovar

Baylor College of Medicine

Career Start Year 2002

Number of shared co-authors 3

Indra Neil Sarkar

Center for Biomedical Informatics, Brown University

Career Start Year 2001

Number of shared co-authors 1

Brent S Pedersen

Center for Molecular Medicine, University Medical Center Utrecht

Career Start Year 2001

Number of shared co-authors 1

Michael Brudno

University of Toronto

Career Start Year 2000

Number of shared co-authors 10

Tony Burdett

European Bioinformatics Institute

Career Start Year 2000

Number of shared co-authors 10

Vineet Bafna

University of California San Diego

Career Start Year 1998

Number of shared co-authors 1

Nirav Merchant

Data Science Institute, University of Arizona

Career Start Year 1995

Number of shared co-authors 0

Steven J M Jones

University of British Columbia

Career Start Year 1995

Number of shared co-authors 3

Mark Yandell

University of Utah

Career Start Year 1994

Number of shared co-authors 4

Atul J Butte

Bakar Computational Health Sciences Institute, University of California san francisco

Career Start Year 1993

Number of shared co-authors 1

Jean-Pierre A Kocher

Mayo Clinic

Career Start Year 1991

Number of shared co-authors 0

Aleksandar Milosavljevic

Baylor College of Medicine

Career Start Year 1991

Number of shared co-authors 8

Elaine R Mardis

The Ohio State University

Career Start Year 1988

Number of shared co-authors 4

Warren A Kibbe

Duke Clinical Research Institute, Duke University

Career Start Year 1987

Number of shared co-authors 2

Vincent Ferretti

Ontario Institute for Cancer Research

Career Start Year 1986

Number of shared co-authors 0

Justin T Reese

Lawrence Berkeley National Laboratory

Career Start Year 1985

Number of shared co-authors 0

row(s) 1 - 30 of 30

Michael J Clare-Salzler

University of Florida College of Medicine

Co-authored papers 4

Bret S E Heale

Humanized Health Consulting LLC

Co-authored papers 4

Aziz A Boxwala

Elimu Informatics Inc.

Co-authored papers 3

James Shalaby

Co-authored papers 3

Clive Wasserfall

Co-authored papers 3

Robert H Dolin

Elimu Informatics Inc.

Co-authored papers 3

Todd M Brusko

College of Medicine, Diabetes Institute, University of Florida

Co-authored papers 3

Ammar Husami

Cincinnati Children's Hospital Medical Center

Co-authored papers 3

Margaret R Wallace

UF Genetics Institute, University of Florida

Co-authored papers 2

Yenisel Cruz-Almeida

University of Florida, McKnight Brain Institute

Co-authored papers 2

Patrick Concannon

Co-authored papers 2

Alex H Wagner

Iowa State University, Mayo Clinic, Nationwide Children's Hospital, The Ohio State University College of Medicine, University of Iowa, Washington University in Saint Louis

Co-authored papers 2

Lawrence Babb

Broad Institute of MIT and Harvard

Co-authored papers 2

James H Leebens-Mack

Co-authored papers 2

Rod A Wing

Arizona Genomics Institute, University of Arizona

Co-authored papers 2

Gil Alterovitz

Brigham and Women's Hospital

Co-authored papers 2