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Author Details

Adam M Phillippy
National Human Genome Research Institute, National Institutes of Health
2002
123
58
PMIDPaper TitleJournal TitlePublished Year
38036856Improved sequence mapping using a complete reference genome and lift-over.Nat Methods2024
36208288A contiguous de novo genome assembly of sugar beet EL10 (Beta vulgaris L.).DNA Res2023
38077089The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes.bioRxiv2023
37857613Low mutation rate in epaulette sharks is consistent with a slow rate of evolution in sharks.Nat Commun2023
37710018Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation.Nat Methods2023
37786716Efficient High-Quality Metagenome Assembly from Long Accurate Reads using Minimizer-space de Bruijn Graphs.bioRxiv2023
37786714The genome of the colonial hydroid <i>Hydractinia</i> reveals their stem cells utilize a toolkit of evolutionarily shared genes with all animals.bioRxiv2023
37612512The complete sequence of a human Y chromosome.Nature2023
37603771Minmers are a generalization of minimizers that enable unbiased local Jaccard estimation.Bioinformatics2023
37425881Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy.bioRxiv2023
37325780Minmers are a generalization of minimizers that enable unbiased local Jaccard estimation.bioRxiv2023
37013528Reference genomes of channel catfish and blue catfish reveal multiple pericentric chromosome inversions.BMC Biol2023
37165241Recombination between heterologous human acrocentric chromosomes.Nature2023
37398417The variation and evolution of complete human centromeres.bioRxiv2023
36797493Telomere-to-telomere assembly of diploid chromosomes with Verkko.Nat Biotechnol2023
35020798StainedGlass: interactive visualization of massive tandem repeat structures with identity heatmaps.Bioinformatics2022
35444317The Human Pangenome Project: a global resource to map genomic diversity.Nature2022
35365778Long-read mapping to repetitive reference sequences using Winnowmap2.Nat Methods2022
35361932Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation.Nat Methods2022
35361931Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies.Nat Methods2022
35357935A complete reference genome improves analysis of human genetic variation.Science2022
35357925From telomere to telomere: The transcriptional and epigenetic state of human repeat elements.Science2022
35357917Segmental duplications and their variation in a complete human genome.Science2022
36167554False gene and chromosome losses in genome assemblies caused by GC content variation and repeats.Genome Biol2022
36161920A family of unusual immunoglobulin superfamily genes in an invertebrate histocompatibility complex.Proc Natl Acad Sci U S A2022
36344967A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes.BMC Biol2022
35042810Balancing openness with Indigenous data sovereignty: An opportunity to leave no one behind in the journey to sequence all of life.Proc Natl Acad Sci U S A2022
35042802Standards recommendations for the Earth BioGenome Project.Proc Natl Acad Sci U S A2022
33089966Reference genome and demographic history of the most endangered marine mammal, the vaquita.Mol Ecol Resour2021
36777713Population genomics of the critically endangered kākāpō.Cell Genom2021
33911273Towards complete and error-free genome assemblies of all vertebrate species.Nature2021
33911078Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C.Nat Commun2021
33828295The structure, function and evolution of a complete human chromosome 8.Nature2021
33910227Evolutionary and biomedical insights from a marmoset diploid genome assembly.Nature2021
33542373The genomic structure of a human chromosome 22 nucleolar organizer region determined by TAR cloning.Sci Rep2021
34409936The whale shark genome reveals patterns of vertebrate gene family evolution.Elife2021
34253230Author Correction: Improved reference genome of the arboviral vector Aedes albopictus.Genome Biol2021
33408411Platypus and echidna genomes reveal mammalian biology and evolution.Nature2021
32191811De novo assembly of the cattle reference genome with single-molecule sequencing.Gigascience2020
31898513Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies.BMC Biol2020
33116284Strategic vision for improving human health at The Forefront of Genomics.Nature2020
32686750Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes.Nat Biotechnol2020
32801147HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads.Genome Res2020
32657365Weighted minimizer sampling improves long read mapping.Bioinformatics2020
32847630Improved reference genome of the arboviral vector Aedes albopictus.Genome Biol2020
32928274Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies.Genome Biol2020
32699374Author Correction: A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
32753684Genomic analyses of a livestock pest, the New World screwworm, find potential targets for genetic control programs.Commun Biol2020
32242610Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle.Gigascience2020
32385271Effect of sequence depth and length in long-read assembly of the maize inbred NC358.Nat Commun2020
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Collaborators

National Human Genome Research Institute, National Institutes of Health
Co-authored papers 75
Johns Hopkins University
Co-authored papers 22
Center for Computational Biology, Johns Hopkins University
Co-authored papers 17
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University of Washington
Co-authored papers 12
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 12
The Rockefeller University
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UC Santa Cruz Genomics Institute, University of California
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Center for Computational Biology, Johns Hopkins School of Medicine
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Baylor College of Medicine
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National Institute of Standards and Technology
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University of Southern California
Co-authored papers 7
University of Copenhagen, Universitetsparken 15
Co-authored papers 7
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DNAnexus Inc.
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Stowers Institute for Medical Research
Co-authored papers 6
University of Cambridge
Co-authored papers 6
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 5
European Bioinformatics Institute
Co-authored papers 5
Genomics Institute, University of California Santa Cruz
Co-authored papers 5
Max Planck Institute of Molecular Cell Biology and Genetics
Co-authored papers 5
Center for Computational Biology, Johns Hopkins University
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Center for Digital Medicine, Heinrich Heine University Dusseldorf
Co-authored papers 5
Genomics Institute, University of California Santa Cruz
Co-authored papers 5
National Institute of Standards and Technology
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Department of Biochemistry and the Fralin Life Sciences Institute, Virginia Tech
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