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Author Details

Justin Guinney
University of Washington
2006
85
32
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36727397Molecular response in newly diagnosed chronic-phase chronic myeloid leukemia: prediction modeling and pathway analysis.Haematologica2023
36940483USP10 Regulates ZEB1 Ubiquitination and Protein Stability to Inhibit ZEB1-Mediated Colorectal Cancer Metastasis.Mol Cancer Res2023
37248386Machine learning in rare disease.Nat Methods2023
36727397Molecular response in newly diagnosed chronic-phase chronic myeloid leukemia: prediction modeling and pathway analysis.Haematologica2023
37099070Validation of a Transcriptome-Based Assay for Classifying Cancers of Unknown Primary Origin.Mol Diagn Ther2023
37248386Machine learning in rare disease.Nat Methods2023
37099070Validation of a Transcriptome-Based Assay for Classifying Cancers of Unknown Primary Origin.Mol Diagn Ther2023
36940483USP10 Regulates ZEB1 Ubiquitination and Protein Stability to Inhibit ZEB1-Mediated Colorectal Cancer Metastasis.Mol Cancer Res2023
35106508A community challenge for a pancancer drug mechanism of action inference from perturbational profile data.Cell Rep Med2022
36409497External Validation of an Ensemble Model for Automated Mammography Interpretation by Artificial Intelligence.JAMA Netw Open2022
36494374A Multifaceted benchmarking of synthetic electronic health record generation models.Nat Commun2022
35106508A community challenge for a pancancer drug mechanism of action inference from perturbational profile data.Cell Rep Med2022
36409497External Validation of an Ensemble Model for Automated Mammography Interpretation by Artificial Intelligence.JAMA Netw Open2022
36494374A Multifaceted benchmarking of synthetic electronic health record generation models.Nat Commun2022
32805036The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment.J Am Med Inform Assoc2021
33691031Establishing the reliability of algorithms.Pac Symp Biocomput2021
33585982Integrated molecular and clinical analysis of low-grade gliomas in children with neurofibromatosis type 1 (NF1).Acta Neuropathol2021
33681983Knowledge-based classification of fine-grained immune cell types in single-cell RNA-Seq data.Brief Bioinform2021
34264955Brigatinib causes tumor shrinkage in both NF2-deficient meningioma and schwannoma through inhibition of multiple tyrosine kinases but not ALK.PLoS One2021
34146471A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery.Cell Syst2021
34255046Clinical Characterization and Prediction of Clinical Severity of SARS-CoV-2 Infection Among US Adults Using Data From the US National COVID Cohort Collaborative.JAMA Netw Open2021
34085538Outcomes of COVID-19 in Patients With Cancer: Report From the National COVID Cohort Collaborative (N3C).J Clin Oncol2021
34302041Bayesian multi-source regression and monocyte-associated gene expression predict BCL-2 inhibitor resistance in acute myeloid leukemia.NPJ Precis Oncol2021
34083538Crowdsourced mapping of unexplored target space of kinase inhibitors.Nat Commun2021
32805036The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment.J Am Med Inform Assoc2021
34633425A Continuously Benchmarked and Crowdsourced Challenge for Rapid Development and Evaluation of Models to Predict COVID-19 Diagnosis and Hospitalization.JAMA Netw Open2021
34520464Crowdsourced identification of multi-target kinase inhibitors for RET- and TAU- based disease: The Multi-Targeting Drug DREAM Challenge.PLoS Comput Biol2021
34430931Preview of "Interpretable systems biomarkers predict response to immune-checkpoint inhibitors".Patterns (N Y)2021
34994587Pursuing Better Biomarkers for Immunotherapy Response in Cancer Through a Crowdsourced Data Challenge.JCO Precis Oncol2021
33681983Knowledge-based classification of fine-grained immune cell types in single-cell RNA-Seq data.Brief Bioinform2021
33585982Integrated molecular and clinical analysis of low-grade gliomas in children with neurofibromatosis type 1 (NF1).Acta Neuropathol2021
33691031Establishing the reliability of algorithms.Pac Symp Biocomput2021
34994587Pursuing Better Biomarkers for Immunotherapy Response in Cancer Through a Crowdsourced Data Challenge.JCO Precis Oncol2021
34520464Crowdsourced identification of multi-target kinase inhibitors for RET- and TAU- based disease: The Multi-Targeting Drug DREAM Challenge.PLoS Comput Biol2021
34430931Preview of "Interpretable systems biomarkers predict response to immune-checkpoint inhibitors".Patterns (N Y)2021
34633425A Continuously Benchmarked and Crowdsourced Challenge for Rapid Development and Evaluation of Models to Predict COVID-19 Diagnosis and Hospitalization.JAMA Netw Open2021
34302041Bayesian multi-source regression and monocyte-associated gene expression predict BCL-2 inhibitor resistance in acute myeloid leukemia.NPJ Precis Oncol2021
34264955Brigatinib causes tumor shrinkage in both NF2-deficient meningioma and schwannoma through inhibition of multiple tyrosine kinases but not ALK.PLoS One2021
34146471A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery.Cell Syst2021
34085538Outcomes of COVID-19 in Patients With Cancer: Report From the National COVID Cohort Collaborative (N3C).J Clin Oncol2021
34083538Crowdsourced mapping of unexplored target space of kinase inhibitors.Nat Commun2021
34255046Clinical Characterization and Prediction of Clinical Severity of SARS-CoV-2 Infection Among US Adults Using Data From the US National COVID Cohort Collaborative.JAMA Netw Open2021
32561749A clinically and genomically annotated nerve sheath tumor biospecimen repository.Sci Data2020
32119094Evaluation of Combined Artificial Intelligence and Radiologist Assessment to Interpret Screening Mammograms.JAMA Netw Open2020
32098059Integrative Analysis Identifies Candidate Tumor Microenvironment and Intracellular Signaling Pathways that Define Tumor Heterogeneity in NF1.Genes (Basel)2020
32972997Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data.Life Sci Alliance2020
32638010Piloting a model-to-data approach to enable predictive analytics in health care through patient mortality prediction.J Am Med Inform Assoc2020
33127656Society for Immunotherapy of Cancer clinical and biomarkers data sharing resource document: Volume I-conceptual challenges.J Immunother Cancer2020
32561749A clinically and genomically annotated nerve sheath tumor biospecimen repository.Sci Data2020
33007815A Machine-Learning Tool Concurrently Models Single Omics and Phenome Data for Functional Subtyping and Personalized Cancer Medicine.Cancers (Basel)2020
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Collaborators

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Geisel School of Medicine, Dartmouth College
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Bill & Melinda Gates Foundation
Co-authored papers 7
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Co-authored papers 6
Institute of Computational Biomedicine, Heidelberg University
Co-authored papers 6
Johns Hopkins University
Co-authored papers 6
University of Wisconsin-Madison.
Co-authored papers 6
Benaroya Research Institute at Virginia Mason
Co-authored papers 6
Gies College of Business, University of Illinois at Urbana-Champaign.
Co-authored papers 5
Icahn School of Medicine at Mount Sinai
Co-authored papers 5
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Sage Bionetworks, University of Washington
Co-authored papers 4
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Institute for Systems Biology
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UW Medicine Diabetes Institute, University of Washington
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University of Washington School of Medicine
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University of Colorado Anschutz Medical Campus
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