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Author Details

Adam Siepel
1995
106
49
PMIDPaper TitleJournal TitlePublished Year
37503269guides maize diversification and domestication by RNAi.2023
36909514Domain-adaptive neural networks improve supervised machine learning based on simulated population genetic data.2023
34888675A Deep-Learning Approach for Inference of Selective Sweeps from the Ancestral Recombination Graph.Molecular Biology and Evolution2022
35962045Author Correction: Comparative and demographic analysis of orang-utan genomes.Nature2022
35879308Extreme purifying selection against point mutations in the human genome.Nature Communications2022
35416423A multiple alignment workflow shows the effect of repeat masking and parameter tuning on alignment in plants.Plant Genome2022
35981753RNA Pol II pausing facilitates phased pluripotency transitions by buffering transcription.Genes and Development2022
36318577Selective sweeps on different pigmentation genes mediate convergent evolution of island melanism in two incipient bird species.PLoS Genetics2022
34382072Deconvolution of expression for nascent RNA-sequencing data (DENR) highlights pre-RNA isoform diversity in human cells.2021
33588838Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq data.BMC Biology2021
33988830Characterization of Gene Expression Signatures for the Identification of Cellular Heterogeneity in the Developing Mammary Gland.Journal of Mammary Gland Biology and Neoplasia2021
33821285Circadian immunity, sunrise time and the seasonality of respiratory infections.2021
34556174ACE: a probabilistic model for characterizing gene-level essentiality in CRISPR screens.2021
32573438A community-maintained standard library of population genetic models.Elife2020
31954511From Summary Statistics to Gene Trees: Methods for Inferring Positive Selection.Trends in Genetics2020
32176292Phylogenetic Modeling of Regulatory Element Turnover Based on Epigenomic Data.Molecular Biology and Evolution2020
32042156An inferred fitness consequence map of the rice genome.2020
31975170Inference of Ancestral Recombination Graphs Using ARGweaver.Methods in Molecular Biology2020
32760067Mapping gene flow between ancient hominins through demography-aware inference of the ancestral recombination graph.PLoS Genetics2020
33199636Genomic islands of differentiation in a rapid avian radiation have been driven by recent selective sweeps.Proceedings of the National Academy of Sciences of the United States of America2020
31043510Erratum: Deep experimental profiling of microRNA diversity, deployment, and evolution across the genus.Genome Research2019
30559490An evolutionary framework for measuring epigenomic information and estimating cell-type-specific fitness consequences.Nature Genetics2019
30481262PhastWeb: a web interface for evolutionary conservation scoring of multiple sequence alignments using phastCons and phyloP.2019
30787474Publisher Correction: An evolutionary framework for measuring epigenomic information and estimating cell-type-specific fitness consequences.Nature Genetics2019
31249063Estimation of allele-specific fitness effects across human protein-coding sequences and implications for disease.Genome Research2019
31358028Challenges in funding and developing genomic software: roots and remedies.2019
29233922Deep experimental profiling of microRNA diversity, deployment, and evolution across the genus.Genome Research2018
29379187Dynamic evolution of regulatory element ensembles in primate CD4 T cells.Nature Ecology and Evolution2018
29361467Scikit-ribo Enables Accurate Estimation and Robust Modeling of Translation Dynamics at Codon Resolution.Cell Syst2018
28288115Fast, scalable prediction of deleterious noncoding variants from functional and population genomic data.Nature Genetics2017
29051389New genes often acquire male-specific functions but rarely become essential in .Genes and Development2017
29025894Nascent RNA sequencing reveals a dynamic global transcriptional response at genes and enhancers to the natural medicinal compound celastrol.Genome Research2017
28029159Is a super-enhancer greater than the sum of its parts?Nature Genetics2016
26886800Ancient gene flow from early modern humans into Eastern Neanderthals.Nature2016
26943675Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs.PLoS Genet2016
26175196Distinguishing noise from signal in patterns of genomic divergence in a highly polymorphic avian radiation.Molecular Ecology2015
25799441Identification of active transcriptional regulatory elements from GRO-seq data.Nature Methods2015
25815464GAGA factor maintains nucleosome-free regions and has a role in RNA polymerase II recruitment to promoters.PLoS Genet2015
25599402A method for calculating probabilities of fitness consequences for point mutations across the human genome.Nature Genetics2015
24831947Genome-wide inference of ancestral recombination graphs.PLoS Genetics2014
25332374Diverse modes of evolutionary emergence and flux of conserved microRNA clusters.RNA2014
25402615The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease.Nat Biotechnol2014
25383968Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers.Nature Genetics2014
25294974Enabling large-scale next-generation sequence assembly with Blacklight.Concurr Comput2014
24453982Genome sequencing highlights the dynamic early history of dogs.PLoS Genet2014
25218861Cis-regulatory elements and human evolution.Current Opinion in Genetics and Development2014
24985917Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines.Genome Res2014
24942624Adaptive evolution of testis-specific, recently evolved, clustered miRNAs in Drosophila.RNA2014
24836452Contrasting X-linked and autosomal diversity across 14 human populations.American Journal of Human Genetics2014
23386628Inference of natural selection from interspersed genomic elements based on polymorphism and divergence.Molecular Biology and Evolution2013
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National Human Genome Research Institute, National Institutes of Health
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