Author details

Full Name

David F Burke

Affiliation

European Bioinformatics Institute (EMBL-EBI)

ORCID

Career Start Year

1997

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36690744	Towards a structurally resolved human protein interaction network.	Nat Struct Mol Biol	2023
37800947	Antigenic mapping of the hemagglutinin of the H9 subtype influenza A viruses using sera from Japanese quail (<i>Coturnix c. japonica</i>).	J Virol	2023
37565755	Characterization of A/H7 influenza virus global antigenic diversity and key determinants in the hemagglutinin globular head mediating A/H7N9 antigenic evolution.	mBio	2023
37112987	Structural Consequences of Antigenic Variants of Human A/H3N2 Influenza Viruses.	Viruses	2023
33563825	Plasticity of the Influenza Virus H5 HA Protein.	mBio	2021
32287326	Characterizing Emerging Canine H3 Influenza Viruses.	PLoS Pathog	2020
33060197	Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.	Science	2020
33102445	Energy Landscape for the Membrane Fusion Pathway in Influenza A Hemagglutinin From Discrete Path Sampling.	Front Chem	2020
30355680	Plasticity of Amino Acid Residue 145 Near the Receptor Binding Site of H3 Swine Influenza A Viruses and Its Impact on Receptor Binding and Antibody Recognition.	J Virol	2019
31017567	Epistatic interactions can moderate the antigenic effect of substitutions in haemagglutinin of influenza H3N2 virus.	J Gen Virol	2019
30967460	Antigenic Drift of the Influenza A(H1N1)pdm09 Virus Neuraminidase Results in Reduced Effectiveness of A/California/7/2009 (H1N1pdm09)-Specific Antibodies.	mBio	2019
30700609	The Molecular Basis for Antigenic Drift of Human A/H2N2 Influenza Viruses.	J Virol	2019
29855467	Antigenic characterization of highly pathogenic avian influenza A(H5N1) viruses with chicken and ferret antisera reveals clade-dependent variation in hemagglutination inhibition profiles.	Emerg Microbes Infect	2018
27679478	Influenza Research Database: An integrated bioinformatics resource for influenza virus research.	Nucleic Acids Res	2017
28792671	Characterization of influenza A(H1N1)pdm09 viruses isolated from Nepalese and Indian outbreak patients in early 2015.	Influenza Other Respir Viruses	2017
26792744	Amino Acid Substitutions That Affect Receptor Binding and Stability of the Hemagglutinin of Influenza A/H7N9 Virus.	J Virol	2016
27113719	The global antigenic diversity of swine influenza A viruses.	Elife	2016
27572841	Selection of antigenically advanced variants of seasonal influenza viruses.	Nat Microbiol	2016
25609810	Identification of amino acid substitutions supporting antigenic change of influenza A(H1N1)pdm09 viruses.	J Virol	2015
24522915	Substitutions near the hemagglutinin receptor-binding site determine the antigenic evolution of influenza A H3N2 viruses in U.S. swine.	J Virol	2014
25418838	Circulation of reassortant influenza A(H7N9) viruses in poultry and humans, Guangdong Province, China, 2013.	Emerg Infect Dis	2014
25391151	A recommended numbering scheme for influenza A HA subtypes.	PLoS One	2014
25126555	Polymorphisms at amino acid residues 141 and 154 influence conformational variation in ovine PrP.	Biomed Res Int	2014
24922572	Circulating avian influenza viruses closely related to the 1918 virus have pandemic potential.	Cell Host Microbe	2014
24917596	Antigenic variation of clade 2.1 H5N1 virus is determined by a few amino acid substitutions immediately adjacent to the receptor binding site.	mBio	2014
23925116	Limited airborne transmission of H7N9 influenza A virus between ferrets.	Nature	2013
24086684	Quantifying the fitness advantage of polymerase substitutions in Influenza A/H7N9 viruses during adaptation to humans.	PLoS One	2013
24264991	Substitutions near the receptor binding site determine major antigenic change during influenza virus evolution.	Science	2013
22682293	A review of influenza haemagglutinin receptor binding as it relates to pandemic properties.	Vaccine	2012
22723414	The potential for respiratory droplet-transmissible A/H5N1 influenza virus to evolve in a mammalian host.	Science	2012
22723413	Airborne transmission of influenza A/H5N1 virus between ferrets.	Science	2012
21937642	Antigenic and genetic evolution of equine influenza A (H3N8) virus from 1968 to 2007.	J Virol	2011
22143798	Discordant antigenic drift of neuraminidase and hemagglutinin in H1N1 and H3N2 influenza viruses.	Proc Natl Acad Sci U S A	2011
20844044	Virulence-associated substitution D222G in the hemagglutinin of 2009 pandemic influenza A(H1N1) virus affects receptor binding.	J Virol	2010
19465683	Antigenic and genetic characteristics of swine-origin 2009 A(H1N1) influenza viruses circulating in humans.	Science	2009
18003615	Structure of a glycosylphosphatidylinositol-anchored domain from a trypanosome variant surface glycoprotein.	J Biol Chem	2008
18237407	Comparative modelling by restraint-based conformational sampling.	BMC Struct Biol	2008
17931166	The stability and aggregation of ovine prion protein associated with classical and atypical scrapie correlates with the ease of unwinding of helix-2.	Biochem J	2008
17341496	Andante: reducing side-chain rotamer search space during comparative modeling using environment-specific substitution probabilities.	Bioinformatics	2007
18172930	A structural bioinformatics approach to the analysis of nonsynonymous single nucleotide polymorphisms (nsSNPs) and their relation to disease.	J Bioinform Comput Biol	2007
17708757	Genome bioinformatic analysis of nonsynonymous SNPs.	BMC Bioinformatics	2007
16524830	Structural biology and bioinformatics in drug design: opportunities and challenges for target identification and lead discovery.	Philos Trans R Soc Lond B Biol Sci	2006
15932902	PROVAT: a tool for Voronoi tessellation analysis of protein structures and complexes.	Bioinformatics	2005
16252284	Structural differences between allelic variants of the ovine prion protein revealed by molecular dynamics simulations.	Proteins	2005
12596261	Ab initio construction of polypeptide fragments: Accuracy of loop decoy discrimination by an all-atom statistical potential and the AMBER force field with the Generalized Born solvation model.	Proteins	2003
12682062	A novel type of deubiquitinating enzyme.	J Biol Chem	2003
11522920	Improved protein loop prediction from sequence alone.	Protein Eng	2001
11835486	Sequence-structure homology recognition by iterative alignment refinement and comparative modeling.	Proteins	2001
11457455	Sequence analyses and comparative modeling of fly and worm fibroblast growth factor receptors indicate that the determinants for FGF and heparin binding are retained in evolution.	FEBS Lett	2001
11524380	HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families.	Bioinformatics	2001

1 - 50 of 59

Neeladri Sen

Institute of Structural and Molecular Biology, University College London

Career Start Year 2017

Number of shared co-authors 0

Rosalba Lepore

Basel University Hospital and University of Basel

Career Start Year 2011

Number of shared co-authors 1

Nan Zhao

Department of Computer Science and Informatics Institute, University of Missouri

Career Start Year 2007

Number of shared co-authors 4

Mark N Wass

University of Kent

Career Start Year 2007

Number of shared co-authors 1

Jaume Bonet

Institute of Bioengineering, Ecole Polytechnique Federale de Lausanne

Career Start Year 2006

Number of shared co-authors 2

Narcis Fernandez-Fuentes

Institute of Biological, Aberystwyth University

Career Start Year 2002

Number of shared co-authors 2

Surendra S Negi

Institute for Human Infections and Immunity, The University of Texas Medical Branch

Career Start Year 2001

Number of shared co-authors 2

Daron M Standley

Osaka university

Career Start Year 1998

Number of shared co-authors 4

Mallur S Madhusudhan

Indian Institute of Science Education and Research Pune

Career Start Year 1996

Number of shared co-authors 2

Robert B Russell

Heidelberg University

Career Start Year 1991

Number of shared co-authors 1

Ram Samudrala

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 1990

Number of shared co-authors 2

Paul A Bates

The Francis Crick Institute

Career Start Year 1989

Number of shared co-authors 2

Roland L Dunbrack

Fox Chase Cancer Center

Career Start Year 1989

Number of shared co-authors 3

Herman W T van Vlijmen

Leiden Academic Centre for Drug Research (LACDR), Leiden University

Career Start Year 1988

Number of shared co-authors 2

Miriam Eisenstein

Weizmann Institute of Science

Career Start Year 1988

Number of shared co-authors 4

Adam Godzik

University of California Riverside

Career Start Year 1987

Number of shared co-authors 5

Mark S Johnson

Abo Akademi University

Career Start Year 1985

Number of shared co-authors 4

Randy J Read

Cambridge Institute for Medical Research, University of Cambridge

Career Start Year 1982

Number of shared co-authors 1

Ruben Abagyan

Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California

Career Start Year 1981

Number of shared co-authors 1

Ruth Nussinov

Sackler School of Medicine, Tel Aviv University

Career Start Year 1980

Number of shared co-authors 2

Chris Sander

Broad Institute of MIT and Harvard

Career Start Year 1979

Number of shared co-authors 6

Michael J E Sternberg

Imperial College London

Career Start Year 1976

Number of shared co-authors 3

David S Moss

Institute of Structural and Molecular Biology, University of London

Career Start Year 1976

Number of shared co-authors 2

David I Stuart

University of Oxford

Career Start Year 1976

Number of shared co-authors 2

Shoshana J Wodak

VIB-VUB Center for Structural Biology

Career Start Year 1975

Number of shared co-authors 3

Ian A Wilson

The Scripps Research Institute, USA The Skaggs Institute for Chemical Biology

Career Start Year 1975

Number of shared co-authors 13

John Moult

Institute for Bioscience and Biotechnology Research

Career Start Year 1970

Number of shared co-authors 3

Michael Levitt

Stanford University

Career Start Year 1969

Number of shared co-authors 2

Andras Fiser

Albert Einstein College of Medicine

Career Start Year 1968

Number of shared co-authors 4

Jens Meiler

Vanderbilt University

Career Start Year 1954

Number of shared co-authors 3

row(s) 1 - 30 of 30

Tom L Blundell

Heartand Lung Research Institute, University of Cambridge

Co-authored papers 19

Gabriele Neumann

Influenza Research Institute, University of Wisconsin-Madison

Co-authored papers 5

Yoshihiro Kawaoka

Influenza Research Institute, University of Wisconsin

Co-authored papers 5

Masato Hatta

Influenza Research Institute, University of Wisconsin-Madison

Co-authored papers 4

Paul I W de Bakker

Vertex Pharmaceuticals

Co-authored papers 4

Adolfo Garc??a-Sastre

Icahn School of Medicine at Mount Sinai

Co-authored papers 3

Nancy J Cox

Vanderbilt University Medical Center

Co-authored papers 2

Pedro Beltrao

Institute of Molecular Systems Biology, ETH Zurich

Co-authored papers 2

Inigo Barrio-Hernandez

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 2

Alistair S Dunham

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 2

Ramanathan Sowdhamini

Indian Institute of Science

Co-authored papers 2

Marion Koopmans

Erasmus Medical Center

Co-authored papers 2

Shufang Fan

Influenza Research Institute, University of Wisconsin

Co-authored papers 2

James C Paulson

Co-authored papers 2

Emmie de Wit

National Institute of Allergy and Infectious Diseases, National Institutes of Health

Co-authored papers 2

Swanand Gore

Co-authored papers 2

Danish Memon

European Bioinformatics Institute

Co-authored papers 2

Christopher B Wilson

Drukier Institute for Children's Health

Co-authored papers 2

Hannes Braberg

University of California San Francisco

Co-authored papers 1

Eric Tse

School of Clinical Medicine, University of Hong Kong

Co-authored papers 1

Matthew Elliott

College of Life Sciences, University of Dundee

Co-authored papers 1

Petras J Kundrotas

The University of Kansas

Co-authored papers 1

Owen R Davies

Institute of Cell Biology, University of Edinburgh

Co-authored papers 1

Gregory E Merz

University of California san francisco

Co-authored papers 1

David Wilkes

Caryl and Israel Englander Institute for Precision Medicine.

Co-authored papers 1

Lauren M Sauer

University of California los angeles

Co-authored papers 1

Zun Zar Chi Naing

Quantitative Biosciences Institute (QBI), University of California San Francisco

Co-authored papers 1

Alexander Leitner

ETH Zurich

Co-authored papers 1

Jiewei Xu

Quantitative Biosciences Institute (QBI), University of California san francisco

Co-authored papers 1

Nadia Herrera

University of California san francisco

Co-authored papers 1

1 - 30

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