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Author Details

Aviv Regev
Broad Institute of MIT and Harvard
1987
418
156
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37425718A cellular and spatial atlas of <i>TP53</i> -associated tissue remodeling in lung adenocarcinoma.bioRxiv2024
37425718A cellular and spatial atlas of <i>TP53</i> -associated tissue remodeling in lung adenocarcinoma.bioRxiv2024
36109685Mostly natural sequencing-by-synthesis for scRNA-seq using Ultima sequencing.Nat Biotechnol2023
36109685Mostly natural sequencing-by-synthesis for scRNA-seq using Ultima sequencing.Nat Biotechnol2023
37664617Transcriptomic and proteomic assessment of tocilizumab response in a randomized controlled trial of patients hospitalized with COVID-19.iScience2023
37828379Targeting PGLYRP1 promotes antitumor immunity while inhibiting autoimmune neuroinflammation.Nat Immunol2023
37653227Author Correction: Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling.Nat Biotechnol2023
37985876Spatial host-microbiome sequencing reveals niches in the mouse gut.Nat Biotechnol2023
38076853A deep lung cell atlas reveals cytokine-mediated lineage switching of a rare cell progenitor of the human airway epithelium.bioRxiv2023
37872410Scalable genetic screening for regulatory circuits using compressed Perturb-seq.Nat Biotechnol2023
38052854Leukemia-intrinsic determinants of CAR-T response revealed by iterative in vivo genome-wide CRISPR screening.Nat Commun2023
37961084Multi-modal skin atlas identifies a multicellular immune-stromal community associated with altered cornification and specific T cell expansion in atopic dermatitis.bioRxiv2023
37286545Integrated multi-omics analyses reveal homology-directed repair pathway as a unique dependency in near-haploid leukemia.Blood Cancer J2023
37156936A deep learning algorithm to predict risk of pancreatic cancer from disease trajectories.Nat Med2023
37344597B-cell-specific checkpoint molecules that regulate anti-tumour immunity.Nature2023
37086403Emergence of division of labor in tissues through cell interactions and spatial cues.Cell Rep2023
37028419Structural and functional properties of mSWI/SNF chromatin remodeling complexes revealed through single-cell perturbation screens.Mol Cell2023
37336975Multicellular communities are perturbed in the aging human brain and Alzheimer's disease.Nat Neurosci2023
37323575Targeted <i>in silico</i> characterization of fusion transcripts in tumor and normal tissues via FusionInspector.Cell Rep Methods2023
37131717Single-cell temporal dynamics reveals the relative contributions of transcription and degradation to cell-type specific gene expression in zebrafish embryos.bioRxiv2023
36945609Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer's disease.bioRxiv2023
36752797Remodeling of colon plasma cell repertoire within ulcerative colitis patients.J Exp Med2023
37390046A guide to the BRAIN Initiative Cell Census Network data ecosystem.PLoS Biol2023
37386249Single-cell multi-omics of mitochondrial DNA disorders reveals dynamics of purifying selection across human immune cells.Nat Genet2023
37258747A Roadmap for the Human Gut Cell Atlas.Nat Rev Gastroenterol Hepatol2023
36807640Temporal single-cell atlas of non-neuronal retinal cells reveals dynamic, coordinated multicellular responses to central nervous system injury.Nat Immunol2023
37443254Leveraging polygenic enrichments of gene features to predict genes underlying complex traits and diseases.Nat Genet2023
37384417Cell-type specific defects in PTEN-mutant cortical organoids converge on abnormal circuit activity.Hum Mol Genet2023
36747806Compressed Perturb-seq: highly efficient screens for regulatory circuits using random composite perturbations.bioRxiv2023
36747789Systematically characterizing the roles of E3-ligase family members in inflammatory responses with massively parallel Perturb-seq.bioRxiv2023
36993643Inference of single cell profiles from histology stains with the Single-Cell omics from Histology Analysis Framework (SCHAF).bioRxiv2023
36864197In silico tissue generation and power analysis for spatial omics.Nat Methods2023
36797494TACCO unifies annotation transfer and decomposition of cell identities for single-cell and spatial omics.Nat Biotechnol2023
36792778Mitochondrial single-cell ATAC-seq for high-throughput multi-omic detection of mitochondrial genotypes and chromatin accessibility.Nat Protoc2023
36608654A transcription factor atlas of directed differentiation.Cell2023
37495702Author Correction: A single-cell atlas of human and mouse white adipose tissue.Nature2023
37664617Transcriptomic and proteomic assessment of tocilizumab response in a randomized controlled trial of patients hospitalized with COVID-19.iScience2023
38076853A deep lung cell atlas reveals cytokine-mediated lineage switching of a rare cell progenitor of the human airway epithelium.bioRxiv2023
37961084Multi-modal skin atlas identifies a multicellular immune-stromal community associated with altered cornification and specific T cell expansion in atopic dermatitis.bioRxiv2023
37653227Author Correction: Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling.Nat Biotechnol2023
38052854Leukemia-intrinsic determinants of CAR-T response revealed by iterative in vivo genome-wide CRISPR screening.Nat Commun2023
37985876Spatial host-microbiome sequencing reveals niches in the mouse gut.Nat Biotechnol2023
37828379Targeting PGLYRP1 promotes antitumor immunity while inhibiting autoimmune neuroinflammation.Nat Immunol2023
37872410Scalable genetic screening for regulatory circuits using compressed Perturb-seq.Nat Biotechnol2023
37495702Author Correction: A single-cell atlas of human and mouse white adipose tissue.Nature2023
37258747A Roadmap for the Human Gut Cell Atlas.Nat Rev Gastroenterol Hepatol2023
36993643Inference of single cell profiles from histology stains with the Single-Cell omics from Histology Analysis Framework (SCHAF).bioRxiv2023
37323575Targeted <i>in silico</i> characterization of fusion transcripts in tumor and normal tissues via FusionInspector.Cell Rep Methods2023
37156936A deep learning algorithm to predict risk of pancreatic cancer from disease trajectories.Nat Med2023
37390046A guide to the BRAIN Initiative Cell Census Network data ecosystem.PLoS Biol2023
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Collaborators

Orit Rozenblatt-Rosen
Co-authored papers 92
Nir Hacohen
Broad Institute of MIT and Harvard
Co-authored papers 49
Danielle Dionne
Co-authored papers 37
Alex K Shalek
Institute for Medical Engineering & Science, Massachusetts Institute of Technology
Co-authored papers 32
Nir Friedman
Co-authored papers 27
Nir Yosef
Center for Computational Biology, University of California berkeley
Co-authored papers 27
Orr Ashenberg
Co-authored papers 25
Rahul Satija
Center for Genomics and Systems Biology, New York University
Co-authored papers 24
Ramnik J Xavier
Broad Institute of MIT and Harvard
Co-authored papers 24
Eric S Lander
Vanderbilt-Ingram Cancer Center, Vanderbilt University
Co-authored papers 23
Itay Tirosh
Weizmann Institute of Medical Sciences
Co-authored papers 22
Michal Slyper
Co-authored papers 20
Michael S Cuoco
Co-authored papers 20
Feng Zhang
Massachusetts Institute of Technology, USA Broad Institute
Co-authored papers 18
Ido Amit
Weizmann Institute of Science
Co-authored papers 16
Karthik Shekhar
Co-authored papers 16
Bradley E Bernstein
Broad Institute of MIT and Harvard
Co-authored papers 15
Mario L Suv??
Broad Institute of MIT and Harvard
Co-authored papers 15
Philip L De Jager
Columbia University Medical Center
Co-authored papers 15
Julia Waldman
Co-authored papers 14
Sarah A Teichmann
Wellcome Sanger Institute
Co-authored papers 14
Matan Hofree
Broad Institute of Harvard and MIT
Co-authored papers 14
Steven A Carr
Broad Institute of MIT and Harvard
Co-authored papers 14
Naomi Habib
Co-authored papers 13
Jason D Buenrostro
Harvard University, Broad Institute of MIT and Harvard
Co-authored papers 13
Nathalie Pochet
Broad Institute of MIT and Harvard
Co-authored papers 13
Alexandra-Chloé Villani
Co-authored papers 13
Gad Getz
Broad Institute of the Massachusetts Institute of Technology and Harvard
Co-authored papers 13
Manuel Garber
Co-authored papers 12
Tyler Jacks
Co-authored papers 12
Release 1.2