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| 37774136 | UCSF ChimeraX: Tools for structure building and analysis. | Protein Sci | 2023 |
| 32881101 | UCSF ChimeraX: Structure visualization for researchers, educators, and developers. | Protein Sci | 2021 |
| 31311884 | Clinical Persistence of Chlamydia trachomatis Sexually Transmitted Strains Involves Novel Mutations in the Functional αββα Tetramer of the Tryptophan Synthase Operon. | mBio | 2019 |
| 31780431 | Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. | Structure | 2019 |
| 31848290 | Reply to Rockey et al., "Genomics and Chlamydial Persistence <i>In Vivo</i>". | mBio | 2019 |
| 28710774 | UCSF ChimeraX: Meeting modern challenges in visualization and analysis. | Protein Sci | 2018 |
| 29964044 | Molecular Visualization on the Holodeck. | J Mol Biol | 2018 |
| 26856248 | Transcriptomic variation of pharmacogenes in multiple human tissues and lymphoblastoid cell lines. | Pharmacogenomics J | 2017 |
| 28365730 | Biocuration in the structure-function linkage database: the anatomy of a superfamily. | Database (Oxford) | 2017 |
| 28187133 | An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins. | PLoS Comput Biol | 2017 |
| 28948912 | Actin-based protrusions of migrating neutrophils are intrinsically lamellar and facilitate direction changes. | Elife | 2017 |
| 28605775 | Biocuration in the structure-function linkage database: the anatomy of a superfamily. | Database (Oxford) | 2017 |
| 28054422 | An approach to functionally relevant clustering of the protein universe: Active site profile-based clustering of protein structures and sequences. | Protein Sci | 2017 |
| 27835946 | DASP3: identification of protein sequences belonging to functionally relevant groups. | BMC Bioinformatics | 2016 |
| 25212755 | cddApp: a Cytoscape app for accessing the NCBI conserved domain database. | Bioinformatics | 2015 |
| 26095030 | Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop. | Structure | 2015 |
| 25954868 | Multidomain Assembler (MDA) Generates Models of Large Multidomain Proteins. | Biophys J | 2015 |
| 25540183 | RRDistMaps: a UCSF Chimera tool for viewing and comparing protein distance maps. | Bioinformatics | 2015 |
| 24271399 | The Structure-Function Linkage Database. | Nucleic Acids Res | 2014 |
| 25285206 | enhancedGraphics: a Cytoscape app for enhanced node graphics. | F1000Res | 2014 |
| 24861624 | Enhancing UCSF Chimera through web services. | Nucleic Acids Res | 2014 |
| 22231567 | Genetic and epigenetic regulation of the organic cation transporter 3, SLC22A3. | Pharmacogenomics J | 2013 |
| 21963794 | UCSF Chimera, MODELLER, and IMP: an integrated modeling system. | J Struct Biol | 2012 |
| 22323229 | Macromolecular assembly structures by comparative modeling and electron microscopy. | Methods Mol Biol | 2012 |
| 21097780 | ModBase, a database of annotated comparative protein structure models, and associated resources. | Nucleic Acids Res | 2011 |
| 22070249 | clusterMaker: a multi-algorithm clustering plugin for Cytoscape. | BMC Bioinformatics | 2011 |
| 21956618 | A common 5'-UTR variant in MATE2-K is associated with poor response to metformin. | Clin Pharmacol Ther | 2011 |
| 21368754 | Functional characterization of liver enhancers that regulate drug-associated transporters. | Clin Pharmacol Ther | 2011 |
| 21118823 | Improving the quality of protein similarity network clustering algorithms using the network edge weight distribution. | Bioinformatics | 2011 |
| 20052679 | Comparison of human solute carriers. | Protein Sci | 2010 |
| 20947014 | Workshop on molecular animation. | Structure | 2010 |
| 20859243 | Role of organic cation transporter 3 (SLC22A3) and its missense variants in the pharmacologic action of metformin. | Pharmacogenet Genomics | 2010 |
| 20525940 | Computational tools for the interactive exploration of proteomic and structural data. | Mol Cell Proteomics | 2010 |
| 20668102 | Genetic variants of human organic anion transporter 4 demonstrate altered transport of endogenous substrates. | Am J Physiol Renal Physiol | 2010 |
| 19190775 | Using sequence similarity networks for visualization of relationships across diverse protein superfamilies. | PLoS One | 2009 |
| 19745787 | Identification and characterization of novel polymorphisms in the basal promoter of the human transporter, MATE1. | Pharmacogenet Genomics | 2009 |
| 19742321 | Genetic variation in the proximal promoter of ABC and SLC superfamilies: liver and kidney specific expression and promoter activity predict variation. | PLoS One | 2009 |
| 19172157 | Genetic variants in multidrug and toxic compound extrusion-1, hMATE1, alter transport function. | Pharmacogenomics J | 2009 |
| 19141711 | Functional genetic variation in the basal promoter of the organic cation/carnitine transporters OCTN1 (SLC22A4) and OCTN2 (SLC22A5). | J Pharmacol Exp Ther | 2009 |
| 19098160 | Identification and characterization of proximal promoter polymorphisms in the human concentrative nucleoside transporter 2 (SLC28A2). | J Pharmacol Exp Ther | 2009 |
| 18364470 | The human multidrug resistance protein 4 (MRP4, ABCC4): functional analysis of a highly polymorphic gene. | J Pharmacol Exp Ther | 2008 |
| 16963278 | Visualizing density maps with UCSF Chimera. | J Struct Biol | 2007 |
| 17637833 | Modeling insertional mutagenesis using gene length and expression in murine embryonic stem cells. | PLoS One | 2007 |
| 17623706 | structureViz: linking Cytoscape and UCSF Chimera. | Bioinformatics | 2007 |
| 17700366 | Functional effects of protein sequence polymorphisms in the organic cation/ergothioneine transporter OCTN1 (SLC22A4). | Pharmacogenet Genomics | 2007 |
| 17728125 | Visualization software for molecular assemblies. | Curr Opin Struct Biol | 2007 |
| 16381950 | The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse. | Nucleic Acids Res | 2006 |
| 16836757 | Tools for integrated sequence-structure analysis with UCSF Chimera. | BMC Bioinformatics | 2006 |
| 16702441 | Interaction of methotrexate with organic-anion transporting polypeptide 1A2 and its genetic variants. | J Pharmacol Exp Ther | 2006 |
| 16931768 | Functional genetic diversity in the high-affinity carnitine transporter OCTN2 (SLC22A5). | Mol Pharmacol | 2006 |