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Author Details

Ayshwarya Subramanian
Broad Institute of MIT and Harvard
2006
30
16
PMIDPaper TitleJournal TitlePublished Year
37790513TIM-4 Identifies Effector B Cells Expressing A RORγT-Driven Proinflammatory Cytokine Module That Promotes Immune Responses.bioRxiv2024
37790513TIM-4 Identifies Effector B Cells Expressing A RORγT-Driven Proinflammatory Cytokine Module That Promotes Immune Responses.bioRxiv2024
37291336Identification of a protective microglial state mediated by miR-155 and interferon-γ signaling in a mouse model of Alzheimer's disease.Nat Neurosci2023
37291336Identification of a protective microglial state mediated by miR-155 and interferon-γ signaling in a mouse model of Alzheimer's disease.Nat Neurosci2023
35275752Tim-3 adapter protein Bat3 acts as an endogenous regulator of tolerogenic dendritic cell function.Sci Immunol2022
35906236Mouse fetal growth restriction through parental and fetal immune gene variation and intercellular communications cascade.Nat Commun2022
35372810High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways.iScience2022
35614211Discovery of bioactive microbial gene products in inflammatory bowel disease.Nature2022
35549429Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function.Science2022
36324805A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients.bioRxiv2022
36575523Biology-inspired data-driven quality control for scientific discovery in single-cell transcriptomics.Genome Biol2022
35275752Tim-3 adapter protein Bat3 acts as an endogenous regulator of tolerogenic dendritic cell function.Sci Immunol2022
35549429Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function.Science2022
35614211Discovery of bioactive microbial gene products in inflammatory bowel disease.Nature2022
35372810High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways.iScience2022
36575523Biology-inspired data-driven quality control for scientific discovery in single-cell transcriptomics.Genome Biol2022
35906236Mouse fetal growth restriction through parental and fetal immune gene variation and intercellular communications cascade.Nat Commun2022
36324805A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients.bioRxiv2022
34353350Community-wide hackathons to identify central themes in single-cell multi-omics.Genome Biol2021
33655247A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2.bioRxiv2021
33654293Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics.Nat Med2021
34353350Community-wide hackathons to identify central themes in single-cell multi-omics.Genome Biol2021
33915569COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets.Nature2021
34784344Multivariable association discovery in population-scale meta-omics studies.PLoS Comput Biol2021
34433496Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics.Genome Biol2021
34711971Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram.Nat Methods2021
33655247A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2.bioRxiv2021
33654293Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics.Nat Med2021
33915569COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets.Nature2021
34433496Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics.Genome Biol2021
34784344Multivariable association discovery in population-scale meta-omics studies.PLoS Comput Biol2021
34711971Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram.Nat Methods2021
32707077Emergence of a High-Plasticity Cell State during Lung Cancer Evolution.Cancer Cell2020
32707077Emergence of a High-Plasticity Cell State during Lung Cancer Evolution.Cancer Cell2020
32637960A High Content Screen for Mucin-1-Reducing Compounds Identifies Fostamatinib as a Candidate for Rapid Repurposing for Acute Lung Injury during the COVID-19 pandemic.bioRxiv2020
33294858A High-Content Screen for Mucin-1-Reducing Compounds Identifies Fostamatinib as a Candidate for Rapid Repurposing for Acute Lung Injury.Cell Rep Med2020
33294858A High-Content Screen for Mucin-1-Reducing Compounds Identifies Fostamatinib as a Candidate for Rapid Repurposing for Acute Lung Injury.Cell Rep Med2020
32637960A High Content Screen for Mucin-1-Reducing Compounds Identifies Fostamatinib as a Candidate for Rapid Repurposing for Acute Lung Injury during the COVID-19 pandemic.bioRxiv2020
31164141A practical guide to methods controlling false discoveries in computational biology.Genome Biol2019
31784515Single cell census of human kidney organoids shows reproducibility and diminished off-target cells after transplantation.Nat Commun2019
31130381A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia.Cell2019
31164141A practical guide to methods controlling false discoveries in computational biology.Genome Biol2019
31146585Single-Cell Analysis of the Normal Mouse Aorta Reveals Functionally Distinct Endothelial Cell Populations.Circulation2019
31784515Single cell census of human kidney organoids shows reproducibility and diminished off-target cells after transplantation.Nat Commun2019
31130381A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia.Cell2019
31146585Single-Cell Analysis of the Normal Mouse Aorta Reveals Functionally Distinct Endothelial Cell Populations.Circulation2019
29335554Stability of the human faecal microbiome in a cohort of adult men.Nat Microbiol2018
29335554Stability of the human faecal microbiome in a cohort of adult men.Nat Microbiol2018
27164840Erratum to: 'Reference-free inference of tumor phylogenies from single-cell sequencing data'.BMC Genomics2016
27164840Erratum to: 'Reference-free inference of tumor phylogenies from single-cell sequencing data'.BMC Genomics2016
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Collaborators

Aviv Regev
Broad Institute of MIT and Harvard
Co-authored papers 11
Orr Ashenberg
Co-authored papers 8
Orit Rozenblatt-Rosen
Co-authored papers 7
Michal Slyper
Co-authored papers 6
Anna Greka
Co-authored papers 5
Jamie L Marshall
Co-authored papers 5
Danielle Dionne
Co-authored papers 4
Astrid Weins
Co-authored papers 4
Alex K Shalek
Institute for Medical Engineering & Science, Massachusetts Institute of Technology
Co-authored papers 3
Avinash Waghray
Co-authored papers 3
Matan Hofree
Broad Institute of Harvard and MIT
Co-authored papers 3
Stephen J Fleming
Co-authored papers 3
Alexandra-Chloé Villani
Co-authored papers 3
Rajat M Gupta
Co-authored papers 3
Eriene-Heidi Sidhom
Co-authored papers 3
Curtis Huttenhower
Broad Institute of MIT and Harvard
Co-authored papers 3
Ioannis S Vlachos
Harvard Medical School
Co-authored papers 3
Mehrtash Babadi
Co-authored papers 3
Timothy L Tickle
Broad Institute
Co-authored papers 3
Joshua Gould
Co-authored papers 3
Julia Waldman
Co-authored papers 3
Winston Hide
Harvard Medical School
Co-authored papers 3
Steven Gazal
Co-authored papers 2
Kim-Anh L?? Cao
University of Melbourne
Co-authored papers 2
Ellen Todres
Co-authored papers 2
Nir Hacohen
Broad Institute of MIT and Harvard
Co-authored papers 2
Evgenij Fiskin
Co-authored papers 2
Ricard Argelaguet
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Evan Z Macosko
Co-authored papers 2
Vera Pancaldi
Universite de Toulouse, Inserm, CNRS, Universite Toulouse III-Paul Sabatier
Co-authored papers 2
Release 1.2