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Author Details

Gunnar R??tsch
ETH Zurich
1999
99
43
PMIDPaper TitleJournal TitlePublished Year
36124685Integrated longitudinal analysis of adult grade 4 diffuse gliomas with long-term relapse interval revealed upregulation of TGF-β signaling in recurrent tumors.Neuro Oncol2023
37126495ResMiCo: Increasing the quality of metagenome-assembled genomes with deep learning.PLoS Comput Biol2023
37072187Aligning distant sequences to graphs using long seed sketches.Genome Res2023
36697831Author Correction: Genomic basis for RNA alterations in cancer.Nature2023
36717752Integrated multi-omics reveals anaplerotic rewiring in methylmalonyl-CoA mutase deficiency.Nat Metab2023
36796655PipeIT2: A tumor-only somatic variant calling workflow for molecular diagnostic Ion Torrent sequencing data.Genomics2023
35900151SECEDO: SNV-based subclone detection using ultra-low coverage single-cell DNA sequencing.Bioinformatics2022
35609994Lossless indexing with counting de Bruijn graphs.Genome Res2022
35751815Identification, Quantification, and Testing of Alternative Splicing Events from RNA-Seq Data Using SplAdder.Methods Mol Biol2022
35776515RNA Instant Quality Check: Alignment-Free RNA-Degradation Detection.J Comput Biol2022
36001976SF3B1 facilitates HIF1-signaling and promotes malignancy in pancreatic cancer.Cell Rep2022
33482122The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support.Cancer Cell2021
33632898Targeting eIF4A-Dependent Translation of KRAS Signaling Molecules.Cancer Res2021
34252940Topology-based sparsification of graph annotations.Bioinformatics2021
33465079Reconstructing tumor evolutionary histories and clone trees in polynomial-time with SubMARine.PLoS Comput Biol2021
33418078Identification of HIF-dependent alternative splicing in gastrointestinal cancers and characterization of a long, coding isoform of SLC35A3.Genomics2021
32152583Early prediction of circulatory failure in the intensive care unit using machine learning.Nat Med2020
31891531Sparse Binary Relation Representations for Genome Graph Annotation.J Comput Biol2020
33381818SCIM: universal single-cell matching with unpaired feature sets.Bioinformatics2020
32657388Mutational signature learning with supervised negative binomial non-negative matrix factorization.Bioinformatics2020
32570564SPHN/PHRT: Forming a Swiss-Wide Infrastructure for Data-Driven Sepsis Research.Stud Health Technol Inform2020
32591764Publisher Correction: Building an international consortium for tracking coronavirus health status.Nat Med2020
30305285<i>EIF1AX</i> and <i>RAS</i> Mutations Cooperate to Drive Thyroid Tumorigenesis through ATF4 and c-MYC.Cancer Discov2019
30020403Dynamic compression schemes for graph coloring.Bioinformatics2019
31175306Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins.Nat Commun2019
31491388A Pan-cancer Transcriptome Analysis Reveals Pervasive Regulation through Alternative Promoters.Cell2019
31068444HBEGF<sup>+</sup> macrophages in rheumatoid arthritis induce fibroblast invasiveness.Sci Transl Med2019
31142587c-MYC regulates mRNA translation efficiency and start-site selection in lymphoma.J Exp Med2019
30586411BRCA Challenge: BRCA Exchange as a global resource for variants in BRCA1 and BRCA2.PLoS Genet2018
30078747Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients.Cancer Cell2018
30069064Registered access: authorizing data access.Eur J Hum Genet2018
27634950RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints.Bioinformatics2017
28179367Genomic Rearrangements in <i>Arabidopsis</i> Considered as Quantitative Traits.Genetics2017
28263295Prediction of potent shRNAs with a sequential classification algorithm.Nat Biotechnol2017
28708839Tumor Necrosis Factor dynamically regulates the mRNA stabilome in rheumatoid arthritis fibroblast-like synoviocytes.PLoS One2017
26873928SplAdder: identification, quantification and testing of alternative splicing events from RNA-Seq data.Bioinformatics2016
26519503MMR: a tool for read multi-mapper resolution.Bioinformatics2016
27803310Alternative Splicing Substantially Diversifies the Transcriptome during Early Photomorphogenesis and Correlates with the Energy Availability in Arabidopsis.Plant Cell2016
27153731Efficient privacy-preserving string search and an application in genomics.Bioinformatics2016
25592567Integrative genome-wide analysis of the determinants of RNA splicing in kidney renal clear cell carcinoma.Pac Symp Biocomput2015
26690911SVM2Motif--Reconstructing Overlapping DNA Sequence Motifs by Mimicking an SVM Predictor.PLoS One2015
26147685Interferon-γ regulates cellular metabolism and mRNA translation to potentiate macrophage activation.Nat Immunol2015
25939354DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation.Elife2015
24413671Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis.Bioinformatics2014
25866587Graph-regularized 3D shape reconstruction from highly anisotropic and noisy images.Signal Image Video Process2014
25467443Species-wide genetic incompatibility analysis identifies immune genes as hot spots of deleterious epistasis.Cell2014
25516378Genome-wide analysis of alternative splicing in Volvox carteri.BMC Genomics2014
25215497Determination and inference of eukaryotic transcription factor sequence specificity.Cell2014
25079319RNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer.Nature2014
23585274Accurate detection of differential RNA processing.Nucleic Acids Res2013
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Collaborators

Andr?? Kahles
ETH Zurich
Co-authored papers 27
Georg Zeller
Max Planck Institute for Developmental Biology
Co-authored papers 16
Bernhard Sch??lkopf
Max-Planck Institute for Intelligent Systems.
Co-authored papers 10
Oliver Stegle
Wellcome Sanger Institute
Co-authored papers 8
Klaus-Robert M??ller
Google Research
Co-authored papers 7
Natalie R Davidson
University of Colorado Anschutz School of Medicine
Co-authored papers 5
Timo Sachsenberg
Institute for Bioinformatics and Medical Informatics, University of Tubingen
Co-authored papers 5
Mikhail Karasikov
Co-authored papers 4
Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 3
Stephan Ossowski
Institute of Medical Genetics and Applied Genomics, University of Tubingen
Co-authored papers 3
Oliver Kohlbacher
Max Planck Institute for Developmental Biology
Co-authored papers 3
Magnus Nordborg
Co-authored papers 3
Holger Moch
University Hospital Zurich
Co-authored papers 2
Heidi L Rehm
The Broad Institute of MIT and Harvard
Co-authored papers 2
Susan Strome
Co-authored papers 2
Bartha Maria Knoppers
McGill University
Co-authored papers 2
Stephanie O M Dyke
Montreal Neurological Institute, McGill University
Co-authored papers 2
Kelly A Frazer
University of California, USA Institute for Genomic Medicine
Co-authored papers 2
Elisa de Stanchina
Co-authored papers 2
Marc D Perry
Ontario Institute for Cancer Research
Co-authored papers 2
Nuno A Fonseca
European Bioinformatics Institute
Co-authored papers 2
Mark A Rubin
University of Bern
Co-authored papers 2
Joseph R Ecker
The Salk Institute for Biological Studies
Co-authored papers 2
Wenguang Shao
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 2
Bernd Wollscheid
ETH Zurich
Co-authored papers 2
Sandra Goetze
ETH Zurich
Co-authored papers 2
Kazuto Kato
Osaka University
Co-authored papers 2
Chris Sander
Broad Institute of MIT and Harvard
Co-authored papers 2
Charlotte K Y Ng
University of Bern
Co-authored papers 2
Eran Segal
Weizmann Institute of Science
Co-authored papers 2
Release 1.2