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Author Details

Torsten Seemann
University of Melbourne
2006
179
46
PMIDPaper TitleJournal TitlePublished Year
37749210Genomic surveillance for antimicrobial resistance - a One Health perspective.Nat Rev Genet2024
38018979High-performance enrichment-based genome sequencing to support the investigation of hepatitis A virus outbreaks.Microbiol Spectr2024
36599823An ISO-certified genomics workflow for identification and surveillance of antimicrobial resistance.Nat Commun2023
38019123Bioinformatic investigation of discordant sequence data for SARS-CoV-2: insights for robust genomic analysis during pandemic surveillance.Microb Genom2023
37850732The two-component system WalKR provides an essential link between cell wall homeostasis and DNA replication in <i>Staphylococcus aureus</i>.mBio2023
37703880A statistical genomics framework to trace bacterial genomic predictors of clinical outcomes in Staphylococcus aureus bacteremia.Cell Rep2023
36961484Phylogenomic investigation of an outbreak of fluoroquinolone-resistant <i>Salmonella enterica</i> subsp. <i>enterica</i> serovar Paratyphi A in Phnom Penh, Cambodia.Microb Genom2023
36651736Improved Genome Sequence of Australian Methicillin-Resistant Staphylococcus aureus Strain JKD6159.Microbiol Resour Announc2023
36934086Integrative omics identifies conserved and pathogen-specific responses of sepsis-causing bacteria.Nat Commun2023
35165271AusTrakka: Fast-tracking nationalized genomics surveillance in response to the COVID-19 pandemic.Nat Commun2022
35677391State-wide genomic epidemiology investigations of COVID-19 in healthcare workers in 2020 Victoria, Australia: Qualitative thematic analysis to provide insights for future pandemic preparedness.Lancet Reg Health West Pac2022
35699423Niche-specific genome degradation and convergent evolution shaping <i>Staphylococcus aureus</i> adaptation during severe infections.Elife2022
35465046Multi-site implementation of whole genome sequencing for hospital infection control: A prospective genomic epidemiological analysis.Lancet Reg Health West Pac2022
35589689SARS-CoV-2 infection results in immune responses in the respiratory tract and peripheral blood that suggest mechanisms of disease severity.Nat Commun2022
35483111Genomic Evidence of In-Flight SARS-CoV-2 Transmission, India to Australia, April 2021.Emerg Infect Dis2022
35875697Genomic characterisation reveals a dominant lineage of SARS-CoV-2 in Papua New Guinea.Virus Evol2022
35082278Optimising genomic approaches for identifying vancomycin-resistant Enterococcus faecium transmission in healthcare settings.Nat Commun2022
32927479Viral Genomics to Inform Infection-control Response in Occupational Coronavirus Disease 2019 (COVID-19) Transmission.Clin Infect Dis2021
35544081Key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria: a systematic analysis.Lancet Microbe2021
35251740COVID-19: Integrating genomic and epidemiological data to inform public health interventions and policy in Tasmania, Australia.Western Pac Surveill Response J2021
34907895Genomic diversity of antimicrobial resistance in non-typhoidal <i>Salmonella</i> in Victoria, Australia.Microb Genom2021
34528010Tuberculosis in Australia's tropical north: a population-based genomic epidemiological study.Lancet Reg Health West Pac2021
34437802Accessible Platform for High-Throughput COVID-19 Molecular Diagnostics and Genome Sequencing Using a Repurposed 3D Printer for RNA Extraction.ACS Biomater Sci Eng2021
34462740Immune responses in COVID-19 respiratory tract and blood reveal mechanisms of disease severity.Res Sq2021
34543095Genomic Epidemiology and Antimicrobial Resistance Mechanisms of Imported Typhoid in Australia.Antimicrob Agents Chemother2021
34514016Defective Severe Acute Respiratory Syndrome Coronavirus 2 Immune Responses in an Immunocompromised Individual With Prolonged Viral Replication.Open Forum Infect Dis2021
34745054Daptomycin Resistance Occurs Predominantly in <i>vanA</i>-Type Vancomycin-Resistant <i>Enterococcus faecium</i> in Australasia and Is Associated With Heterogeneous and Novel Mutations.Front Microbiol2021
34252365Genomics-informed responses in the elimination of COVID-19 in Victoria, Australia: an observational, genomic epidemiological study.Lancet Public Health2021
32663248Search and Contain: Impact of an Integrated Genomic and Epidemiological Surveillance and Response Program for Control of Carbapenemase-producing Enterobacterales.Clin Infect Dis2021
32237278Isolation and rapid sharing of the 2019 novel coronavirus (SARS-CoV-2) from the first patient diagnosed with COVID-19 in Australia.Med J Aust2020
31911464Comparative Transcriptomic and Functional Assessments of Linezolid-Responsive Small RNA Genes in Staphylococcus aureus.mSystems2020
33293382Comprehensive Genomic Investigation of Adaptive Mutations Driving the Low-Level Oxacillin Resistance Phenotype in Staphylococcus aureus.mBio2020
33020158Prolonged Outbreak of Multidrug-Resistant Shigella sonnei Harboring <i>bla</i><sub>CTX-M-27</sub> in Victoria, Australia.Antimicrob Agents Chemother2020
32959759Case Report: Confirmation by Metagenomic Sequencing of Visceral Leishmaniasis in an Immunosuppressed Returned Traveler.Am J Trop Med Hyg2020
32873808Tracking the COVID-19 pandemic in Australia using genomics.Nat Commun2020
32755529Validation of a single-step, single-tube reverse transcription loop-mediated isothermal amplification assay for rapid detection of SARS-CoV-2 RNA.J Med Microbiol2020
32213261Incursions of Candida auris into Australia, 2018.Emerg Infect Dis2020
30615105Co-circulation of Multidrug-resistant Shigella Among Men Who Have Sex With Men in Australia.Clin Infect Dis2019
31874981Temporal development of the oral microbiome and prediction of early childhood caries.Sci Rep2019
31662462Correction for Kennan et al., "Genomic Evidence for a Globally Distributed, Bimodal Population in the Ovine Footrot Pathogen Dichelobacter nodosus".mBio2019
31848274Mining the Methylome Reveals Extensive Diversity in Staphylococcus epidermidis Restriction Modification.mBio2019
31527262Unstable chromosome rearrangements in <i>Staphylococcus aureus</i> cause phenotype switching associated with persistent infections.Proc Natl Acad Sci U S A2019
31296851Zinc-binding to the cytoplasmic PAS domain regulates the essential WalK histidine kinase of Staphylococcus aureus.Nat Commun2019
31379308A nonclonal outbreak of vancomycin-sensitive <i>Enterococcus faecalis</i> bacteremia in a neonatal intensive care unit.Infect Control Hosp Epidemiol2019
31488838Bridging of Neisseria gonorrhoeae lineages across sexual networks in the HIV pre-exposure prophylaxis era.Nat Commun2019
31315956Genomics for Molecular Epidemiology and Detecting Transmission of Carbapenemase-Producing <i>Enterobacterales</i> in Victoria, Australia, 2012 to 2016.J Clin Microbiol2019
31544213Bionitio: demonstrating and facilitating best practices for bioinformatics command-line software.Gigascience2019
31424550Genomic investigation of Staphylococcus aureus recovered from Gambian women and newborns following an oral dose of intra-partum azithromycin.J Antimicrob Chemother2019
30810520Wave 2 strains of atypical Vibrio cholerae El Tor caused the 2009-2011 cholera outbreak in Papua New Guinea.Microb Genom2019
31107203Emergence and divergence of major lineages of Shiga-toxin-producing Escherichia coli in Australia.Microb Genom2019
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Collaborators

Biomedicine Discovery Institute, Monash University
Co-authored papers 11
Nursing and Health SciencesMonash UniversityClaytonVictoriaAustralia.
Co-authored papers 3
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St. Jude Children's Research Hospital
Co-authored papers 2
US National Museum of Natural History, Smithsonian Institution
Co-authored papers 2
University of Melbourne
Co-authored papers 2
University of Pennsylvania
Co-authored papers 2
Institute of Infection, University of Liverpool
Co-authored papers 1
Center for Cancer Research, National Cancer Institute, National Institutes of Health
Co-authored papers 1
University of Michigan ann arbor
Co-authored papers 1
Co-authored papers 1
Co-authored papers 1
Eagle Genomics Ltd
Co-authored papers 1
University of Melbourne
Co-authored papers 1
The University of Melbourne at the Peter Doherty Institute for Infection and Immunity
Co-authored papers 1
University of Melbourne, The University of Melbourne
Co-authored papers 1
College of Health and Medicine, The Australian National University
Co-authored papers 1
Co-authored papers 1
Co-authored papers 1
university of california san diego School of Medicine
Co-authored papers 1
University of Melbourne
Co-authored papers 1
Database Center for Life Science
Co-authored papers 1
James Hutton Institute
Co-authored papers 1
Autodesk Inc.
Co-authored papers 1
Robert Koch-Institute
Co-authored papers 1
Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University
Co-authored papers 1
Craig Venter Institute, 9704 Medical Center Drive
Co-authored papers 1
The Pennsylvania State University, University Park
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Fondazione Parco Tecnologico Padano
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