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Author Details

Edward C Holmes
Sydney Institute for Infectious Diseases, The University of Sydney
1991
853
128
PMIDPaper TitleJournal TitlePublished Year
37922067Diversity and connectedness of brine shrimp viruses in global hypersaline ecosystems.Sci China Life Sci2024
36862584Substantial viral and bacterial diversity at the bat-tick interface.Microb Genom2023
37491320Expanding the range of the respiratory infectome in Australian feedlot cattle with and without respiratory disease using metatranscriptomics.Microbiome2023
37757732Host specificity shapes fish viromes across lakes on an isolated remote island.Virology2023
37488810Rapid Epidemic Expansion of Chikungunya Virus East/Central/South African Lineage, Paraguay.Emerg Infect Dis2023
37711483Newly identified lineages of porcine hemagglutinating encephalomyelitis virus exhibit respiratory phenotype.Virus Evol2023
37487325Gammaretroviruses, novel viruses and pathogenic bacteria in Australian bats with neurological signs, pneumonia and skin lesions.Virology2023
37906647Evidence for an ancient aquatic origin of the RNA viral order <i>Articulavirales</i>.Proc Natl Acad Sci U S A2023
37523413A 14th century CE Brucella melitensis genome and the recent expansion of the Western Mediterranean clade.PLoS Pathog2023
37656782Genomic epidemiology unveils the dynamics and spatial corridor behind the Yellow Fever virus outbreak in Southern Brazil.Sci Adv2023
37745602Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic.bioRxiv2023
37941997Divergent hepaciviruses, delta-like viruses, and a chu-like virus in Australian marsupial carnivores (dasyurids).Virus Evol2023
37692898Viral community composition of hypersaline lakes.Virus Evol2023
37692894Understanding the divergent evolution and epidemiology of H3N8 influenza viruses in dogs and horses.Virus Evol2023
37647722A metatranscriptomic analysis of geothermal hot springs reveals diverse RNA viruses including the phylum Lenarviricota.Virology2023
37734372Host traits shape virome composition and virus transmission in wild small mammals.Cell2023
37732272Metagenomic analysis of individual mosquitos reveals the ecology of insect viruses.bioRxiv2023
37679456Host phylogeny shapes viral transmission networks in an island ecosystem.Nat Ecol Evol2023
37289052Characterization of an Emergent Chicken H3N8 Influenza Virus in Southern China: a Potential Threat to Public Health.J Virol2023
37116474Zoonotic risk assessment among farmed mammals.Cell2023
37408458Provider perspectives on patient-centredness: participatory formative research and rapid analysis methods to inform the design and implementation of a facility-based HIV care improvement intervention in Zambia.J Int AIDS Soc2023
37408449Patterns of person-centred communications in public HIV clinics: a latent class analysis using the Roter interaction analysis system.J Int AIDS Soc2023
37112986RAPID<i>prep</i>: A Simple, Fast Protocol for RNA Metagenomic Sequencing of Clinical Samples.Viruses2023
37407057Comparison of patient exit interviews with unannounced standardised patients for assessing HIV service delivery in Zambia: a study nested within a cluster randomised trial.BMJ Open2023
36974986Nonsystematic Reporting Biases of the SARS-CoV-2 Variant Mu Could Impact Our Understanding of the Epidemiological Dynamics of Emerging Variants.Genome Biol Evol2023
37199627Viral Capsid, Antibody, and Receptor Interactions: Experimental Analysis of the Antibody Escape Evolution of Canine Parvovirus.J Virol2023
37131602Rapid epidemic expansion of chikungunya virus-ECSA lineage in Paraguay.medRxiv2023
37429936Individual bat virome analysis reveals co-infection and spillover among bats and virus zoonotic potential.Nat Commun2023
36786616Metatranscriptomic Sequencing Reveals Host Species as an Important Factor Shaping the Mosquito Virome.Microbiol Spectr2023
36651521Through an ecological lens: An ecosystem-based approach to zoonotic risk assessment: An ecosystem-based approach to zoonotic risk assessment.EMBO Rep2023
36651046Strong host phylogenetic and ecological effects on host competency for avian influenza in Australian wild birds.Proc Biol Sci2023
36841239Emergence, continuity, and evolution of Yersinia pestis throughout medieval and early modern Denmark.Curr Biol2023
36608597A novel gyrovirus is abundant in yellow-eyed penguin (Megadyptes antipodes) chicks with a fatal respiratory disease.Virology2023
36840391Trajectories of re-engagement: factors and mechanisms enabling patient return to HIV care in Zambia.J Int AIDS Soc2023
36711712Viral capsid, antibody, and receptor interactions: experimental analysis of the antibody escape evolution of canine parvovirus.bioRxiv2023
36631833Nationwide genomic surveillance reveals the prevalence and evolution of honeybee viruses in China.Microbiome2023
36863412Identification of bovine coronavirus in a Daurian ground squirrel expands the host range of Betacoronavirus 1.Virol Sin2023
35229003Assessment of Coronavirus Disease 2019 Intervention Strategies in the Nordic Countries Using Genomic Epidemiology.Open Forum Infect Dis2022
37552713Molecular Monitoring of SARS-CoV-2 in Different Sewage Plants in Venice and the Implications for Genetic Surveillance.ACS ES T Water2022
35617977Human-to-human transmission of Chlamydia psittaci in China, 2020: an epidemiological and aetiological investigation.Lancet Microbe2022
35585202Co-infection with SARS-CoV-2 Omicron and Delta variants revealed by genomic surveillance.Nat Commun2022
35378755Genomic epidemiology reveals the impact of national and international restrictions measures on the SARS-CoV-2 epidemic in Brazil.medRxiv2022
35704744The Ecology of Viral Emergence.Annu Rev Virol2022
35610217Off-season RSV epidemics in Australia after easing of COVID-19 restrictions.Nat Commun2022
35765950The enteric virome of cats with feline panleukopenia differs in abundance and diversity from healthy cats.Transbound Emerg Dis2022
35538563A total infectome approach to understand the etiology of infectious disease in pigs.Microbiome2022
35795296Resolving deep evolutionary relationships within the RNA virus phylum <i>Lenarviricota</i>.Virus Evol2022
35536868Australia as a global sink for the genetic diversity of avian influenza A virus.PLoS Pathog2022
35371559Replacement of the Gamma by the Delta variant in Brazil: Impact of lineage displacement on the ongoing pandemic.Virus Evol2022
35638822Transcriptome Mining Expands Knowledge of RNA Viruses across the Plant Kingdom.J Virol2022
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Collaborators

Institute of Ecology and Evolution, University of Edinburgh
Co-authored papers 43
National Institute of Allergy and Infectious Diseases, National Institutes of Health
Co-authored papers 27
Co-authored papers 17
Co-authored papers 14
Rega Institute, Laboratory of Clinical and Evolutionary Virology
Co-authored papers 13
University of Arizona
Co-authored papers 11
University of California los angeles
Co-authored papers 11
USA Pittsburgh Supercomputing Center (PSC) at Carnegie Mellon University
Co-authored papers 9
University of Texas Medical Branch
Co-authored papers 8
Tulane University School of Medicine
Co-authored papers 7
Co-authored papers 6
Broad Institute of MIT and Harvard
Co-authored papers 5
Sydney Institute for Infectious Diseases, The University of Sydney
Co-authored papers 5
and the Institute of Social and Preventive Medicine, University of Bern
Co-authored papers 4
Massachusetts General Hospital
Co-authored papers 4
Erasmus Medical Center
Co-authored papers 4
Co-authored papers 4
University of California
Co-authored papers 4
Yale School of Public Health
Co-authored papers 4
Broad Institute of MIT and Harvard
Co-authored papers 3
National Institute of Allergy and Infectious Diseases, National Institutes of Health
Co-authored papers 3
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Co-authored papers 3
Harvard University
Co-authored papers 3
Yale School of Public Health
Co-authored papers 3
University of California berkeley
Co-authored papers 3
Ragon Institute of Mass General
Co-authored papers 3
University of California San Diego
Co-authored papers 3
University of Texas Medical Branch
Co-authored papers 3
Memorial Sloan Kettering Cancer Center
Co-authored papers 3
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