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Author Details

Egon L Willighagen
Maastricht University
2003
100
31
PMIDPaper TitleJournal TitlePublished Year
37606097Linking nanomaterial-induced mitochondrial dysfunction to existing adverse outcome pathways for chemicals.ALTEX2024
37941138WikiPathways 2024: next generation pathway database.Nucleic Acids Res2024
36864534PSnpBind-ML: predicting the effect of binding site mutations on protein-ligand binding affinity.J Cheminform2023
37842337ELIXIR and Toxicology: a community in development.F1000Res2023
37697042Artificial intelligence for natural product drug discovery.Nat Rev Drug Discov2023
37974169Author Correction: A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses.BMC Biol2023
37423508A data reusability assessment in the nanosafety domain based on the NSDRA framework followed by an exploratory quantitative structure activity relationships (QSAR) modeling targeting cellular viability.NanoImpact2023
37208467The FAIR Cookbook - the essential resource for and by FAIR doers.Sci Data2023
37101200Extending inherited metabolic disorder diagnostics with biomarker interaction visualizations.Orphanet J Rare Dis2023
36543939Guiding the choice of informatics software and tools for lipidomics research applications.Nat Methods2023
36737837Two years of explicit CiTO annotations.J Cheminform2023
34718729Complex Portal 2022: new curation frontiers.Nucleic Acids Res2022
35616633The LOTUS initiative for open knowledge management in natural products research.Elife2022
35436299Understanding signaling and metabolic paths using semantified and harmonized information about biological interactions.PLoS One2022
35717894FAIR assessment tools: evaluating use and performance.NanoImpact2022
35388368Providing Adverse Outcome Pathways from the AOP-Wiki in a Semantic Web Format to Increase Usability and Accessibility of the Content.Appl In Vitro Toxicol2022
35559614CAS Common Chemistry in 2021: Expanding Access to Trusted Chemical Information for the Scientific Community.J Chem Inf Model2022
36402838Unifying the identification of biomedical entities with the Bioregistry.Sci Data2022
36215146Wikipedia on the CompTox Chemicals Dashboard: Connecting Resources to Enrich Public Chemical Data.J Chem Inf Model2022
36002868European Registry of Materials: global, unique identifiers for (undisclosed) nanomaterials.J Cheminform2022
36284750The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry.Environ Sci Eur2022
35227289PSnpBind: a database of mutated binding site protein-ligand complexes constructed using a multithreaded virtual screening workflow.J Cheminform2022
35295213The AOP-DB RDF: Applying FAIR Principles to the Semantic Integration of AOP Data Using the Research Description Framework.Front Toxicol2022
34924150Research Techniques Made Simple: Lipidomic Analysis in Skin Research.J Invest Dermatol2022
33211851WikiPathways: connecting communities.Nucleic Acids Res2021
33653411What is the role of cheminformatics in a pandemic?J Cheminform2021
33482803A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses.BMC Biol2021
34939300COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.Mol Syst Biol2021
34502343Investigating the Molecular Processes behind the Cell-Specific Toxicity Response to Titanium Dioxide Nanobelts.Int J Mol Sci2021
34411100Ten simple rules for creating reusable pathway models for computational analysis and visualization.PLoS Comput Biol2021
34091802Interpreting the lipidome: bioinformatic approaches to embrace the complexity.Metabolomics2021
34008034A strategy towards the generation of testable adverse outcome pathways for nanomaterials.ALTEX2021
34229726Reply to "FAIR chemical structure in the Journal of Cheminformatics".J Cheminform2021
33947870A resource to explore the discovery of rare diseases and their causative genes.Sci Data2021
33452270A catalogue of 863 Rett-syndrome-causing MECP2 mutations and lessons learned from data integration.Sci Data2021
32371892COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.Sci Data2020
33430994Adoption of the Citation Typing Ontology by the Journal of Cheminformatics.J Cheminform2020
33430970Learning cheminformatics.J Cheminform2020
33322568Can an InChI for Nano Address the Need for a Simplified Representation of Complex Nanomaterials across Experimental and Nanoinformatics Studies?Nanomaterials (Basel)2020
33092028A Semi-Automated Workflow for FAIR Maturity Indicators in the Life Sciences.Nanomaterials (Basel)2020
32678106Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.Sci Data2020
32700469Risk Governance of Emerging Technologies Demonstrated in Terms of its Applicability to Nanomaterials.Small2020
32180547Wikidata as a knowledge graph for the life sciences.Elife2020
32226594NanoSolveIT Project: Driving nanoinformatics research to develop innovative and integrated tools for <i>in silico</i> nanosafety assessment.Comput Struct Biotechnol J2020
30847002Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome.Front Genet2019
31548506The metaRbolomics Toolbox in Bioconductor and beyond.Metabolites2019
31281945Journal of Cheminformatics, ORCID, and GitHub.J Cheminform2019
29136241WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research.Nucleic Acids Res2018
30246165Integration among databases and data sets to support productive nanotechnology: Challenges and recommendations.NanoImpact2018
30622555Introducing WikiPathways as a Data-Source to Support Adverse Outcome Pathways for Regulatory Risk Assessment of Chemicals and Nanomaterials.Front Genet2018
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Collaborators

Chris T Evelo
Maastricht University
Co-authored papers 32
Ola Spjuth
Department of Pharmaceutical Biosciences, Uppsala University
Co-authored papers 18
Christoph Steinbeck
Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena
Co-authored papers 16
Rajarshi Guha
Vertex Pharmaceuticals
Co-authored papers 13
Andra Waagmeester
Maastricht University
Co-authored papers 12
Alexander R Pico
Institute of Data Science and Biotechnology, Gladstone Institutes
Co-authored papers 9
Kristina Hanspers
Gladstone Institutes
Co-authored papers 7
Janna Hastings
Institute for Implementation Science in Health Care, University of Zurich
Co-authored papers 5
Henning Hermjakob
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 5
Alfonso Valencia
Josep Carreras Leukaemia Research Institute (IJC)
Co-authored papers 4
Evan E Bolton
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 4
Reza M Salek
Co-authored papers 4
Steffen Neumann
Leibniz Institute for Plant Biochemistry
Co-authored papers 3
Emek Demir
Knight Cancer Institute, Oregon Health & Science University
Co-authored papers 3
Charles Auffray
European Institute for Systems Biology and Medicine
Co-authored papers 3
Hiroaki Kitano
Co-authored papers 3
Andrew I Su
The Scripps Research Institute
Co-authored papers 3
Emmanuel Barillot
Institut Curie, Universite PSL
Co-authored papers 3
Marc Gillespie
Ontario Institute for Cancer Research
Co-authored papers 3
Reinhard Schneider
Co-authored papers 3
Roger Stephan
Ontario Institute for Cancer Research
Co-authored papers 3
Carole Goble
University of Manchester
Co-authored papers 2
Marco Roos
Leiden University Medical Center
Co-authored papers 2
Michel Dumontier
Institute of Data Science, Maastricht University
Co-authored papers 2
Alasdair J G Gray
Heriot-Watt University
Co-authored papers 2
Lucila Aimo
Centre Medical Universitaire
Co-authored papers 2
Philippe Rocca-Serra
University of Oxford
Co-authored papers 2
Susanna-Assunta Sansone
Oxford e-Research Centre, University of Oxford
Co-authored papers 2
Salvador Capella-Gutierrez
Spanish National Bioinformatics Institute (INB/ELIXIR-ES)
Co-authored papers 2
Alan Bridge
carnegie mellon university
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