Author details

Full Name

David A Nix

Affiliation

ORCID

Career Start Year

1996

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36358918	Replicative Instability Drives Cancer Progression.	Biomolecules	2022
34298235	Detection of circulating tumor DNA without a tumor-informed search using next-generation sequencing is a prognostic biomarker in pancreatic ductal adenocarcinoma.	Neoplasia	2021
32084206	The stochastic nature of errors in next-generation sequencing of circulating cell-free DNA.	PLoS One	2020
31538617	Viral miRNA adaptor differentially recruits miRNAs to target mRNAs through alternative base-pairing.	eLife	2019
30044795	Automated size selection for short cell-free DNA fragments enriches for circulating tumor DNA and improves error correction during next generation sequencing.	PLoS One	2018
30166421	Targeted Gene Sequencing in Children with Crohn's Disease and Their Parents: Implications for Missing Heritability.	G3 (Bethesda)	2018
28459457	Conserved roles of mouse DUX and human DUX4 in activating cleavage-stage genes and MERVL/HERVL retrotransposons.	Nature Genetics	2017
26913838	Adding In Silico Assessment of Potential Splice Aberration to the Integrated Evaluation of BRCA Gene Unclassified Variants.	Hum Mutat	2016
25805852	Genome-wide profiling of the C. elegans dsRNAome.	RNA	2015
25848059	Potential role for snoRNAs in PKR activation during metabolic stress.	Proceedings of the National Academy of Sciences of the United States of America	2015
25582194	Pluripotency transcription factor Oct4 mediates stepwise nucleosome demethylation and depletion.	Mol Cell Biol	2015
23663776	Reprogramming the maternal zebrafish genome after fertilization to match the paternal methylation pattern.	Cell	2013
21685136	Genome-wide analysis identifies changes in histone retention and epigenetic modifications at developmental and imprinted gene loci in the sperm of infertile men.	Human Reproduction	2011
21359205	ENCODE tiling array analysis identifies differentially expressed annotated and novel 5' capped RNAs in hepatitis C infected liver.	PLoS ONE	2011
21924171	DNA methylation profiling in zebrafish.	Methods in Cell Biology	2011
21596849	Genome-wide RNA-seq analysis of human and mouse platelet transcriptomes.	Blood	2011
20354150	Dicer's helicase domain is required for accumulation of some, but not all, C. elegans endogenous siRNAs.	RNA	2010
20828407	Next generation tools for genomic data generation, distribution, and visualization.	BMC Bioinformatics	2010
19525931	Distinctive chromatin in human sperm packages genes for embryo development.	Nature	2009
18271625	Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm.	PLoS Biol	2008
19061503	Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks.	BMC Bioinformatics	2008
18258921	Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets.	Genome Res	2008
18641648	Dynamic transcriptome of Schizosaccharomyces pombe shown by RNA-DNA hybrid mapping.	Nature Genetics	2008
17571346	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.	Nature	2007
17510325	RNA maps reveal new RNA classes and a possible function for pervasive transcription.	Science	2007
16646957	Flexible promoter architecture requirements for coactivator recruitment.	BMC Mol Biol	2006
17480199	Transcriptional landscape of the human and fly genomes: nonlinear and multifunctional modular model of transcriptomes.	Cold Spring Harb Symp Quant Biol	2006
16908844	Comprehensive identification of Drosophila dorsal-ventral patterning genes using a whole-genome tiling array.	Proceedings of the National Academy of Sciences of the United States of America	2006
16732288	Genome-wide analysis of Polycomb targets in Drosophila melanogaster.	Nature Genetics	2006
17040121	Large-scale turnover of functional transcription factor binding sites in Drosophila.	PLoS Comput Biol	2006
15970846	Factors that predict prematurity and preeclampsia in pregnancies that are complicated by systemic lupus erythematosus.	American Journal of Obstetrics and Gynecology	2005
15655071	GATA: a graphic alignment tool for comparative sequence analysis.	BMC Bioinformatics	2005
12956961	The actin-regulating kinase Prk1p negatively regulates Scd5p, a suppressor of clathrin deficiency, in actin organization and endocytosis.	Curr Biol	2003
12482962	Targeted disruption of the murine zyxin gene.	Mol Cell Biol	2003
12665697	Comparison of calcaneus ultrasound and dual X-ray absorptiometry in children at risk of osteopenia.	Journal of Clinical Densitometry	2003
11395501	Targeting of zyxin to sites of actin membrane interaction and to the nucleus.	Journal of Biological Chemistry	2001
11477304	Calcaneus ultrasound measurements in a convenience sample of healthy youth.	Journal of Clinical Densitometry	2001
11035805	Adenomatous polyposis coli protein contains two nuclear export signals and shuttles between the nucleus and cytoplasm.	Proceedings of the National Academy of Sciences of the United States of America	2000
9281590	Nuclear-cytoplasmic shuttling of the focal contact protein, zyxin: a potential mechanism for communication between sites of cell adhesion and the nucleus.	Journal of Cell Biology	1997
8655802	Two cross-linguistic factors underlying tongue shapes for vowels.	Journal of the Acoustical Society of America	1996