Author details

Full Name

David W Ritchie

Affiliation

Universite de Lorraine, CNRS

ORCID

Career Start Year

1997

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
34370723	PPIDomainMiner: Inferring domain-domain interactions from multiple sources of protein-protein interactions.	PLoS Comput Biol	2021
34370723	PPIDomainMiner: Inferring domain-domain interactions from multiple sources of protein-protein interactions.	PLoS Comput Biol	2021
32349654	GrAPFI: predicting enzymatic function of proteins from domain similarity graphs.	BMC Bioinformatics	2020
32349654	GrAPFI: predicting enzymatic function of proteins from domain similarity graphs.	BMC Bioinformatics	2020
32506478	Using restraints in EROS-DOCK improves model quality in pairwise and multicomponent protein docking.	Proteins	2020
32506478	Using restraints in EROS-DOCK improves model quality in pairwise and multicomponent protein docking.	Proteins	2020
31125060	EROS-DOCK: protein-protein docking using exhaustive branch-and-bound rotational search.	Bioinformatics	2019
31744546	The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.	Genome Biol	2019
31612567	Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.	Proteins	2019
31125060	EROS-DOCK: protein-protein docking using exhaustive branch-and-bound rotational search.	Bioinformatics	2019
31073337	Characterization of a relaxase belonging to the MOB<sub>T</sub> family, a widespread family in Firmicutes mediating the transfer of ICEs.	Mob DNA	2019
31744546	The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.	Genome Biol	2019
31612567	Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.	Proteins	2019
31073337	Characterization of a relaxase belonging to the MOB<sub>T</sub> family, a widespread family in Firmicutes mediating the transfer of ICEs.	Mob DNA	2019
29155427	PDB-wide identification of biological assemblies from conserved quaternary structure geometry.	Nat Methods	2018
30453875	Computational discovery of direct associations between GO terms and protein domains.	BMC Bioinformatics	2018
29155427	PDB-wide identification of biological assemblies from conserved quaternary structure geometry.	Nat Methods	2018
30453875	Computational discovery of direct associations between GO terms and protein domains.	BMC Bioinformatics	2018
27701764	Modeling and minimizing CAPRI round 30 symmetrical protein complexes from CASP-11 structural models.	Proteins	2017
27701764	Modeling and minimizing CAPRI round 30 symmetrical protein complexes from CASP-11 structural models.	Proteins	2017
28193156	ECDomainMiner: discovering hidden associations between enzyme commission numbers and Pfam domains.	BMC Bioinformatics	2017
28193156	ECDomainMiner: discovering hidden associations between enzyme commission numbers and Pfam domains.	BMC Bioinformatics	2017
27187202	Calculating and scoring high quality multiple flexible protein structure alignments.	Bioinformatics	2016
27187202	Calculating and scoring high quality multiple flexible protein structure alignments.	Bioinformatics	2016
27412858	Protein-protein docking by fast generalized Fourier transforms on 5D rotational manifolds.	Proc Natl Acad Sci U S A	2016
27122118	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Proteins	2016
27115629	Classification and Exploration of 3D Protein Domain Interactions Using Kbdock.	Methods Mol Biol	2016
27587691	PEPSI-Dock: a detailed data-driven protein-protein interaction potential accelerated by polar Fourier correlation.	Bioinformatics	2016
27587691	PEPSI-Dock: a detailed data-driven protein-protein interaction potential accelerated by polar Fourier correlation.	Bioinformatics	2016
27122118	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Proteins	2016
27115629	Classification and Exploration of 3D Protein Domain Interactions Using Kbdock.	Methods Mol Biol	2016
27412858	Protein-protein docking by fast generalized Fourier transforms on 5D rotational manifolds.	Proc Natl Acad Sci U S A	2016
26030356	Unraveling the molecular architecture of a G protein-coupled receptor/Î²-arrestin/Erk module complex.	Sci Rep	2015
25860777	A structure-based classification and analysis of protein domain family binding sites and their interactions.	Biology (Basel)	2015
26251970	GESSE: Predicting Drug Side Effects from Drug-Target Relationships.	J Chem Inf Model	2015
26030356	Unraveling the molecular architecture of a G protein-coupled receptor/Î²-arrestin/Erk module complex.	Sci Rep	2015
26251970	GESSE: Predicting Drug Side Effects from Drug-Target Relationships.	J Chem Inf Model	2015
25860777	A structure-based classification and analysis of protein domain family binding sites and their interactions.	Biology (Basel)	2015
23775700	DockTrina: docking triangular protein trimers.	Proteins	2014
24271397	KBDOCK 2013: a spatial classification of 3D protein domain family interactions.	Nucleic Acids Res	2014
23775700	DockTrina: docking triangular protein trimers.	Proteins	2014
24155158	Blind prediction of interfacial water positions in CAPRI.	Proteins	2014
24494653	GES polypharmacology fingerprints: a novel approach for drug repositioning.	J Chem Inf Model	2014
24271397	KBDOCK 2013: a spatial classification of 3D protein domain family interactions.	Nucleic Acids Res	2014
24494653	GES polypharmacology fingerprints: a novel approach for drug repositioning.	J Chem Inf Model	2014
24155158	Blind prediction of interfacial water positions in CAPRI.	Proteins	2014
23651484	Recent trends and future prospects in computational GPCR drug discovery: from virtual screening to polypharmacology.	Curr Top Med Chem	2013
24123156	Protein docking using case-based reasoning.	Proteins	2013
24144335	gEMpicker: a highly parallel GPU-accelerated particle picking tool for cryo-electron microscopy.	BMC Struct Biol	2013
24060989	gEMfitter: a highly parallel FFT-based 3D density fitting tool with GPU texture memory acceleration.	J Struct Biol	2013

1 - 50 of 114

Rosalba Lepore

Basel University Hospital and University of Basel

Career Start Year 2011

Number of shared co-authors 67

Guillaume Launay

CNRS UMR 5086 and Universite Claude Bernard Lyon 1

Career Start Year 2007

Number of shared co-authors 4

Juergen Haas

University of Basel

Career Start Year 2007

Number of shared co-authors 6

Jacob D Durrant

University of Pittsburgh

Career Start Year 2006

Number of shared co-authors 0

Jose M Duarte

University of California San Diego

Career Start Year 2000

Number of shared co-authors 8

Matthew P Jacobson

Department of Pharmaceutical Chemistry, University of California san francisco

Career Start Year 1999

Number of shared co-authors 10

Heather A Carlson

University of Michigan ann arbor

Career Start Year 1999

Number of shared co-authors 0

Torsten Schwede

University of Basel

Career Start Year 1999

Number of shared co-authors 38

Roberto Sanchez

Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai

Career Start Year 1996

Number of shared co-authors 5

Mallur S Madhusudhan

Indian Institute of Science Education and Research Pune

Career Start Year 1996

Number of shared co-authors 3

Baldo Oliva

Universitat Pompeu Fabra

Career Start Year 1991

Number of shared co-authors 4

Ram Samudrala

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 1990

Number of shared co-authors 1

Elaine C Meng

Department of Pharmaceutical Chemistry, University of California San Francisco

Career Start Year 1990

Number of shared co-authors 5

Carlos J Camacho

University of Pittsburgh

Career Start Year 1990

Number of shared co-authors 24

Robert Preissner

Institute for Physiology, Charite-University Medicine Berlin

Career Start Year 1990

Number of shared co-authors 0

Gerard J Kleywegt

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 1990

Number of shared co-authors 12

Roland L Dunbrack

Fox Chase Cancer Center

Career Start Year 1989

Number of shared co-authors 42

Gerhard Klebe

Institut fur Pharmazeutische Chemie, Philipps-Universitat Marburg

Career Start Year 1988

Number of shared co-authors 2

Herman W T van Vlijmen

Leiden Academic Centre for Drug Research (LACDR), Leiden University

Career Start Year 1988

Number of shared co-authors 1

Diane Joseph-McCarthy

Boston University

Career Start Year 1987

Number of shared co-authors 1

Andrew R Leach

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 1987

Number of shared co-authors 3

Krzysztof Fidelis

University of California davis

Career Start Year 1987

Number of shared co-authors 11

Mark S Johnson

Abo Akademi University

Career Start Year 1985

Number of shared co-authors 1

Randy J Read

Cambridge Institute for Medical Research, University of Cambridge

Career Start Year 1982

Number of shared co-authors 7

Ruben Abagyan

Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California

Career Start Year 1981

Number of shared co-authors 3

Christine Humblet

Lilly Research Laboratories

Career Start Year 1977

Number of shared co-authors 6

Michael J E Sternberg

Imperial College London

Career Start Year 1976

Number of shared co-authors 80

Stephen H Bryant

National Center for Biotechnology Information

Career Start Year 1973

Number of shared co-authors 4

Andras Fiser

Albert Einstein College of Medicine

Career Start Year 1968

Number of shared co-authors 9

Jens Meiler

Vanderbilt University

Career Start Year 1954

Number of shared co-authors 11

row(s) 1 - 30 of 30

Marie-Dominique Devignes

Universite de Lorraine, CNRS

Co-authored papers 14

Anisah W Ghoorah

University of Mauritius

Co-authored papers 9

Bernard Maigret

Universite de Lorraine, CNRS

Co-authored papers 6

Sergei Grudinin

University Grenoble Alpes, CNRS

Co-authored papers 6

Seyed Ziaeddin Alborzi

Universite de Lorraine, CNRS

Co-authored papers 5

Dima Kozakov

Stony Brook University

Co-authored papers 5

Sandor Vajda

Boston University

Co-authored papers 5

Isaure Chauvot de BeauchÃªne

Co-authored papers 4

Shoshana J Wodak

VIB-VUB Center for Structural Biology

Co-authored papers 3

Miriam Eisenstein

Weizmann Institute of Science

Co-authored papers 3

Paul A Bates

The Francis Crick Institute

Co-authored papers 3

Jianlin Cheng

University of Missouri

Co-authored papers 3

Alexandre M J J Bonvin

Bijvoet Center for Biomolecular Research, Utrecht University

Co-authored papers 3

Juan Fern??ndez-Recio

Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC)

Co-authored papers 3

Chaok Seok

Seoul National University

Co-authored papers 3

Marc F Lensink

University Lille, CNRS

Co-authored papers 3

Sheng-You Huang

Huazhong University of Science and Technology

Co-authored papers 3

Daisuke Kihara

Purdue University

Co-authored papers 3

Brian G Pierce

University of Maryland Institute for Bioscience and Biotechnology Research

Co-authored papers 3

Petr Popov

Skolkovo Institute of Science and Technology

Co-authored papers 3

Thom Vreven

Visterra Inc.

Co-authored papers 3

Adrien S J Melquiond

Oncode Institute & Hubrecht Institute-KNAW and University Medical Center Utrecht

Co-authored papers 3

Xiaoqin Zou

Dalton Cardiovascular Research Center, University of Missouri

Co-authored papers 3

Ilya A Vakser

The University of Kansas

Co-authored papers 3

Brian Jim??nez-Garc??a

Utrecht University

Co-authored papers 3

Iain H Moal

GSK Medicines Research Centre

Co-authored papers 3

Zhiping Weng

University of Massachusetts Medical School

Co-authored papers 3

Petras J Kundrotas

The University of Kansas

Co-authored papers 3

Tyler Borrman

University of Massachusetts Medical School

Co-authored papers 2

Panagiotis L Kastritis

Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg

Co-authored papers 2

1 - 30

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