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Author Details

Michael B Eisen
Howard Hughes Medical Institute, University of California Berkeley
1988
160
73
PMIDPaper TitleJournal TitlePublished Year
36798351Unified bursting strategies in ectopic and endogenous <i>even-skipped</i> expression patterns.bioRxiv2023
37873137Single-fly assemblies fill major phylogenomic gaps across the Drosophilidae Tree of Life.bioRxiv2023
37770067Leveraging genomic redundancy to improve inference and alignment of orthologous proteins.G3 (Bethesda)2023
35313693Microbiome-by-ethanol interactions impact Drosophila melanogaster fitness, physiology, and behavior.iScience2022
35749552Single-nucleus RNA-sequencing in pre-cellularization Drosophila melanogaster embryos.PLoS One2022
36263932Peer review without gatekeeping.Elife2022
33387647A phylogeny for the Drosophila montium species group: A model clade for comparative analyses.Mol Phylogenet Evol2021
34130793Rigorous review and editorial oversight of clinical preprints.Elife2021
34347855Impact of essential workers in the context of social distancing for epidemic control.PLoS One2021
32220952Whole Genome Sequences of 23 Species from the <i>Drosophila montium</i> Species Group (Diptera: Drosophilidae): A Resource for Testing Evolutionary Hypotheses.G3 (Bethesda)2020
33300492Kinetic sculpting of the seven stripes of the Drosophila <i>even-skipped</i> gene.Elife2020
33258772Implementing a "publish, then review" model of publishing.Elife2020
33020626Pledging intellectual property for COVID-19.Nat Biotechnol2020
32724147Make Black history core to degrees, tie tenure to anti-racism efforts.Nature2020
32724146#StopPandemicBias: scientists, share your privilege.Nature2020
32724145COVID-19: save lives with open intellectual-property licences.Nature2020
32501217We need to act now.Elife2020
32209226Publishing in the time of COVID-19.Elife2020
31163026Plan U: Universal access to scientific and medical research via funder preprint mandates.PLoS Biol2019
29768432The ecology of the Drosophila-yeast mutualism in wineries.PLoS One2018
30047862Robust manipulation of the behavior of Drosophila melanogaster by a fungal pathogen in the laboratory.Elife2018
29956254Single Molecule Imaging in Live Embryos Using Lattice Light-Sheet Microscopy.Methods Mol Biol2018
29848444Gene family innovation, conservation and loss on the animal stem lineage.Elife2018
29897962Convergent evolution of gene expression in two high-toothed stickleback populations.PLoS Genet2018
29897334Association mapping from sequencing reads using k-mers.Elife2018
29727464Patterns of chromatin accessibility along the anterior-posterior axis in the early Drosophila embryo.PLoS Genet2018
29526588Rapid Global Spread of wRi-like Wolbachia across Multiple Drosophila.Curr Biol2018
29049289A molecular atlas of the developing ectoderm defines neural, neural crest, placode, and nonneural progenitor identity in vertebrates.PLoS Biol2017
28431021Patterns of Genome-Wide Diversity and Population Structure in the Drosophila athabasca Species Complex.Mol Biol Evol2017
28299188Genome-wide measurement of spatial expression in patterning mutants of <i>Drosophila melanogaster</i>.F1000Res2017
29148971Convergence of topological domain boundaries, insulators, and polytene interbands revealed by high-resolution mapping of chromatin contacts in the early <i>Drosophila melanogaster</i> embryo.Elife2017
28982761Dense Bicoid hubs accentuate binding along the morphogen gradient.Genes Dev2017
29026033Atlas⿦t, patterns from every cell.Science2017
27898741Stable Host Gene Expression in the Gut of Adult Drosophila melanogaster with Different Bacterial Mono-Associations.PLoS One2016
27849518The genome of the crustacean <i>Parhyale hawaiensis,</i> a model for animal development, regeneration, immunity and lignocellulose digestion.Elife2016
25834775Low-cost, low-input RNA-seq protocols perform nearly as well as high-input protocols.PeerJ2015
26358871Transcriptional Activation of the Zygotic Genome in Drosophila.Curr Top Dev Biol2015
26485701Sex Bias and Maternal Contribution to Gene Expression Divergence in Drosophila Blastoderm Embryos.PLoS Genet2015
26673611Oxygen changes drive non-uniform scaling in Drosophila melanogaster embryogenesis.F1000Res2015
26107720Ten Years of PLoS Computational Biology: A Decade of Appreciation and Innovation.PLoS Comput Biol2015
24550743Sex-specific embryonic gene expression in species with newly evolved sex chromosomes.PLoS Genet2014
25462617Saccharomyces cerevisiae mitochondria are required for optimal attractiveness to Drosophila melanogaster.PLoS One2014
25313869Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition.Elife2014
25374784Characterization of the transcriptome, nucleotide sequence polymorphism, and natural selection in the desert adapted mouse Peromyscus eremicus.PeerJ2014
24985915Comparative validation of the D. melanogaster modENCODE transcriptome annotation.Genome Res2014
24824901Structural variation among wild and industrial strains of Penicillium chrysogenum.PLoS One2014
24762628Drosophila embryogenesis scales uniformly across temperature in developmentally diverse species.PLoS Genet2014
22936249A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence.Genome Res2013
24068946Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression.PLoS Genet2013
24058668Mice infected with low-virulence strains of Toxoplasma gondii lose their innate aversion to cat urine, even after extensive parasite clearance.PLoS One2013
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Collaborators

Calico Life Sciences LLC
Co-authored papers 18
Lawrence Berkeley National Laboratory
Co-authored papers 11
National Cancer Institute, National Institutes of Health
Co-authored papers 6
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Oregon Health & Science University Hospital.
Co-authored papers 5
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Center for Computational Biology, Johns Hopkins University
Co-authored papers 5
University of California san francisco
Co-authored papers 5
Massachusetts Institute of Technology
Co-authored papers 5
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University of California berkeley
Co-authored papers 4
Indian Institute of Technology Bombay
Co-authored papers 4
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University of Wisconsin-Madison
Co-authored papers 4
Howard Hughes Medical Institute
Co-authored papers 4
Co-authored papers 4
Altius Institute for Biomedical Sciences
Co-authored papers 3
Co-authored papers 3
Center for Computational Biology, Johns Hopkins School of Medicine
Co-authored papers 3
Vanderbilt-Ingram Cancer Center, Vanderbilt University
Co-authored papers 3
The University of Florida
Co-authored papers 3
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Co-authored papers 3
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University of California san francisco
Co-authored papers 3
University of Georgia
Co-authored papers 3
University of California berkeley
Co-authored papers 3
University of California San Francisco
Co-authored papers 2
Precision Medicine Network Inc.
Co-authored papers 2
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 2