Author details

Full Name

Arun Prasad Pandurangan

Affiliation

ORCID

Career Start Year

2000

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36915381	<i>In silico</i> analyses of isoniazid and streptomycin resistance-associated mutations in <i>Mycobacterium tuberculosis</i>.	Comput Struct Biotechnol J	2023
36350672	InterPro in 2022.	Nucleic Acids Res	2023
37925514	Mutational spectra are associated with bacterial niche.		2023
36808136	Hypothesis-free phenotype prediction within a genetics-first framework.	Nat Commun	2023
37178506	SARS-CoV-2 Omicron subvariant spike N405 unlikely to rapidly deamidate.	Biochem Biophys Res Commun	2023
35575289	In silico analysis of mutations near S1/S2 cleavage site in SARS-CoV-2 spike protein reveals increased propensity of glycosylation in Omicron strain.	J Med Virol	2022
34957223	Editorial: Computational Approaches to Study the Impact of Mutations on Disease and Drug Resistance.	Front Mol Biosci	2021
33156333	The InterPro protein families and domains database: 20 years on.	Nucleic Acids Res	2021
32621218	The Genome3D Consortium for Structural Annotations of Selected Model Organisms.	Methods Mol Biol	2020
31693276	Prediction of impacts of mutations on protein structure and interactions: SDM, a statistical approach, and mCSM, using machine learning.	Protein Sci	2020
31733063	Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation.	Nucleic Acids Res	2020
32445639	Optopharmacology reveals a differential contribution of native GABA receptors to dendritic and somatic inhibition using azogabazine.	Neuropharmacology	2020
30445555	The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver.	Nucleic Acids Res	2019
30398656	InterPro in 2019: improving coverage, classification and access to protein sequence annotations.	Nucleic Acids Res	2019
27913149	Mutations at protein-protein interfaces: Small changes over big surfaces have large impacts on human health.	Prog Biophys Mol Biol	2017
28408471	Genomes, structural biology and drug discovery: combating the impacts of mutations in genetic disease and antibiotic resistance.	Biochem Soc Trans	2017
28525590	SDM: a server for predicting effects of mutations on protein stability.	Nucleic Acids Res	2017
27035968	Two distinct trimeric conformations of natively membrane-anchored full-length herpes simplex virus 1 glycoprotein B.	Proc Natl Acad Sci U S A	2016
26306092	<i>TEMPy</i>: a Python library for assessment of three-dimensional electron microscopy density fits.	J Appl Crystallogr	2015
26655474	Î³-TEMPy: Simultaneous Fitting of Components in 3D-EM Maps of Their Assembly Using a Genetic Algorithm.	Structure	2015
25072879	Photo-antagonism of the GABAA receptor.	Nat Commun	2014
25457051	Stepwise visualization of membrane pore formation by suilysin, a bacterial cholesterol-dependent cytolysin.	Elife	2014
24333899	Combined approaches to flexible fitting and assessment in virus capsids undergoing conformational change.	J Struct Biol	2014
24010709	Conformational States of macromolecular assemblies explored by integrative structure calculation.	Structure	2013
23850455	The structure of herpesvirus fusion glycoprotein B-bilayer complex reveals the protein-membrane and lateral protein-protein interaction.	Structure	2013
22079400	Finding rigid bodies in protein structures: Application to flexible fitting into cryoEM maps.	J Struct Biol	2012
22796953	RIBFIND: a web server for identifying rigid bodies in protein structures and to aid flexible fitting into cryo EM maps.	Bioinformatics	2012
22514349	Structural analysis of coxsackievirus A7 reveals conformational changes associated with uncoating.	J Virol	2012
28510038	MOLS sampling and its applications in structural biophysics.	Biophysical Reviews	2010
19968302	Protein-ligand docking using mutually orthogonal Latin squares (MOLSDOCK).	Journal of Chemical Information and Modeling	2009
18465087	A new peptide docking strategy using a mean field technique with mutually orthogonal Latin square sampling.	Journal of Computer-Aided Molecular Design	2008
17357159	Exploring the conformational space of protein loops using a mean field technique with MOLS sampling.	Proteins: Structure, Function and Bioinformatics	2007
17914233	Exploring conformational space using a mean field technique with MOLS sampling.	Journal of Biosciences	2007
16268784	MOLS--a program to explore the potential energy surface of a peptide and locate its low energy conformations.	In Silico Biology	2005
11091393	Fascinating Alkali Halide Structures of Different Dimensionalities Incorporated in Host Lattices.	Angewandte Chemie - International Edition	2000