Author details

Full Name

Juan D Chavez

Affiliation

ORCID

Career Start Year

2006

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35107270	Multiplexed Isobaric Quantitative Cross-Linking Reveals Drug-Induced Interactome Changes in Breast Cancer Cells.	Analytical Chemistry	2022
35594376	Improved Interpretation of Protein Conformational Differences and Ligand Occupancy in Large-Scale Cross-Link Data.	Journal of Proteome Research	2022
35575090	Upregulation of mitochondrial ATPase inhibitory factor 1 (ATPIF1) mediates increased glycolysis in mouse hearts.	Journal of Clinical Investigation	2022
35609787	Differential Proteome and Interactome Analysis Reveal the Basis of Pleiotropy Associated With the Histidine Methyltransferase Hpm1p.	Mol Cell Proteomics	2022
36405497	Mitochondrial interactome quantitation reveals structural changes in metabolic machinery in the failing murine heart.		2022
34232610	In-Cell Labeling and Mass Spectrometry for Systems-Level Structural Biology.	Chemical Reviews	2022
33289940	Applications and advancements of FT-ICR-MS for interactome studies.	Mass Spectrometry Reviews	2022
34393043	Quantitative interactome analysis with chemical cross-linking and mass spectrometry.	Current Opinion in Chemical Biology	2022
34882395	Multiplexed Cross-Linking with Isobaric Quantitative Protein Interaction Reporter Technology.	Analytical Chemistry	2021
34017973	Deciphering the architecture and interactome of hnRNP proteins and enigmRBPs.	Molecular Omics	2021
33554956	Acetylation of muscle creatine kinase negatively impacts high-energy phosphotransfer in heart failure.	JCI insight	2021
33594738	Crosslinking mass spectrometry: A link between structural biology and systems biology.	Protein Science	2021
33263396	Leveraging the Entirety of the Protein Data Bank to Enable Improved Structure Prediction Based on Cross-Link Data.	Journal of Proteome Research	2021
32554501	Mitochondrial protein interaction landscape of SS-31.	Proceedings of the National Academy of Sciences of the United States of America	2020
31885275	Longitudinal Transcriptomic, Proteomic, and Metabolomic Analyses of <i>Citrus sinensis</i> (L.) Osbeck Graft-Inoculated with "<i>Candidatus</i> Liberibacter asiaticus".	J Proteome Res	2020
32338516	Longitudinal Transcriptomic, Proteomic, and Metabolomic Analysis of <i>Citrus limon</i> Response to Graft Inoculation by <i>Candidatus Liberibacter asiaticus</i>.	J Proteome Res	2020
32031408	In Vivo Cross-Linking MS Reveals Conservation in OmpA Linkage to Different Classes of Î²-Lactamase Enzymes.	J Am Soc Mass Spectrom	2020
32969639	Isobaric Quantitative Protein Interaction Reporter Technology for Comparative Interactome Studies.	Analytical Chemistry	2020
31045356	First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study.	Anal Chem	2019
31747606	Cellular Interactome Dynamics during Paclitaxel Treatment.	Cell Reports	2019
30172868	Chemical cross-linking with mass spectrometry: a tool for systems structural biology.	Current Opinion in Chemical Biology	2019
30137231	Increased sensitivity with automated validation of XL-MS cleavable peptide crosslinks.		2019
30520642	Tools for 3D Interactome Visualization.	J Proteome Res	2019
31270507	Systems structural biology measurements by in vivo cross-linking with mass spectrometry.		2019
31267744	Prediction of an Upper Limit for the Fraction of Interprotein Cross-Links in Large-Scale In Vivo Cross-Linking Studies.	Journal of Proteome Research	2019
31189925	Hsp90 middle domain phosphorylation initiates a complex conformational program to recruit the ATPase-stimulating cochaperone Aha1.	Nature Communications	2019
29676898	Mango: A General Tool for Collision Induced Dissociation-Cleavable Cross-Linked Peptide Identification.	Anal Chem	2018
29934502	Precision therapeutic targeting of human cancer cell motility.	Nat Commun	2018
29665372	Integrating Cross-Linking Experiments with Ab Initio Protein-Protein Docking.	J Mol Biol	2018
29199018	Chemical Crosslinking Mass Spectrometry Analysis of Protein Conformations and Supercomplexes in Heart Tissue.	Cell Systems	2018
28130547	Mitochondrial protein interactome elucidated by chemical cross-linking mass spectrometry.	Proc Natl Acad Sci U S A	2017
28386418	Protein interaction networks at the host-microbe interface in <i>Diaphorina citri</i>, the insect vector of the citrus greening pathogen.	R Soc Open Sci	2017
28502641	Insights in luteovirid structural biology guided by chemical cross-linking and high resolution mass spectrometry.	Virus Research	2017
28152603	Large-Scale and Targeted Quantitative Cross-Linking MS Using Isotope-Labeled Protein Interaction Reporter (PIR) Cross-Linkers.	J Proteome Res	2017
27489254	Normalization of NAD+ Redox Balance as a Therapy for Heart Failure.	Circulation	2016
27153666	XLinkDB 2.0: integrated, large-scale structural analysis of protein crosslinking data.	Bioinformatics	2016
27341434	InÂ Vivo Conformational Dynamics of Hsp90 and Its Interactors.	Cell Chem Biol	2016
27089058	Spectral Library Searching To Identify Cross-Linked Peptides.	J Proteome Res	2016
26411867	XLmap: an R package to visualize and score protein structure models based on sites of protein cross-linking.		2016
27997545	A General Method for Targeted Quantitative Cross-Linking Mass Spectrometry.	PLoS One	2016
27834373	In vivo protein interaction network analysis reveals porin-localized antibiotic inactivation in Acinetobacter baumannii strain AB5075.	Nat Commun	2016
26018413	Dynamic Proteome Response of Pseudomonas aeruginosa to Tobramycin Antibiotic Treatment.	Mol Cell Proteomics	2015
25800553	Probing the protein interaction network of Pseudomonas aeruginosa cells by chemical cross-linking mass spectrometry.	Structure	2015
25695747	Analysis of the Campylobacter jejuni genome by SMRT DNA sequencing identifies restriction-modification motifs.	PLoS ONE	2015
26656710	Visualization of Host-Polerovirus Interaction Topologies Using Protein Interaction Reporter Technology.	J Virol	2015
26548613	Host-Microbe Protein Interactions during Bacterial Infection.		2015
26235782	Quantitative interactome analysis reveals a chemoresistant edgotype.	Nat Commun	2015
23413830	XLink-DB: database and software tools for storing and visualizing protein interaction topology data.	J Proteome Res	2013
23354917	Protein interactions, post-translational modifications and topologies in human cells.	Mol Cell Proteomics	2013
23413883	In vivo protein interaction network identified with a novel real-time cross-linked peptide identification strategy.	J Proteome Res	2013