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Author Details

James P Balhoff
Renaissance Computing Institute, University of North Carolina
1998
51
24
PMIDPaper TitleJournal TitlePublished Year
37953324The Human Phenotype Ontology in 2024: phenotypes around the world.Nucleic Acids Res2024
37953324The Human Phenotype Ontology in 2024: phenotypes around the world.Nucleic Acids Res2024
36866529The Gene Ontology knowledgebase in 2023.Genetics2023
37076585The Ontology of Biological Attributes (OBA)-computational traits for the life sciences.Mamm Genome2023
36747660The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences.bioRxiv2023
36866529The Gene Ontology knowledgebase in 2023.Genetics2023
37076585The Ontology of Biological Attributes (OBA)-computational traits for the life sciences.Mamm Genome2023
36747660The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences.bioRxiv2023
35285502Assessing Bayesian Phylogenetic Information Content of Morphological Data Using Knowledge From Anatomy Ontologies.Syst Biol2022
36208225Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.Database (Oxford)2022
35616100A Simple Standard for Sharing Ontological Mappings (SSSOM).Database (Oxford)2022
35285502Assessing Bayesian Phylogenetic Information Content of Morphological Data Using Knowledge From Anatomy Ontologies.Syst Biol2022
35616100A Simple Standard for Sharing Ontological Mappings (SSSOM).Database (Oxford)2022
36208225Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.Database (Oxford)2022
33196056KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response.Patterns (N Y)2021
33964129Reactome and the Gene Ontology: digital convergence of data resources.Bioinformatics2021
33742785Application of MCAT questions as a testing tool and evaluation metric for knowledge graph-based reasoning systems.Clin Transl Sci2021
33196056KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response.Patterns (N Y)2021
34697637OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.Database (Oxford)2021
33742785Application of MCAT questions as a testing tool and evaluation metric for knowledge graph-based reasoning systems.Clin Transl Sci2021
34697637OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.Database (Oxford)2021
33964129Reactome and the Gene Ontology: digital convergence of data resources.Bioinformatics2021
31596473A Logical Model of Homology for Comparative Biology.Syst Biol2020
31596473A Logical Model of Homology for Comparative Biology.Syst Biol2020
33232313Transforming the study of organisms: Phenomic data models and knowledge bases.PLoS Comput Biol2020
33226347Visualization Environment for Federated Knowledge Graphs: Development of an Interactive Biomedical Query Language and Web Application Interface.JMIR Med Inform2020
33226347Visualization Environment for Federated Knowledge Graphs: Development of an Interactive Biomedical Query Language and Web Application Interface.JMIR Med Inform2020
33232313Transforming the study of organisms: Phenomic data models and knowledge bases.PLoS Comput Biol2020
30476213Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources.Nucleic Acids Res2019
31769676ROBOKOP KG and KGB: Integrated Knowledge Graphs from Federated Sources.J Chem Inf Model2019
30476213Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources.Nucleic Acids Res2019
30918448Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions.Biodivers Data J2019
31410449ROBOKOP: an abstraction layer and user interface for knowledge graphs to support question answering.Bioinformatics2019
31548717Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems.Nat Genet2019
31357927ROBOT: A Tool for Automating Ontology Workflows.BMC Bioinformatics2019
31769676ROBOKOP KG and KGB: Integrated Knowledge Graphs from Federated Sources.J Chem Inf Model2019
31357927ROBOT: A Tool for Automating Ontology Workflows.BMC Bioinformatics2019
31410449ROBOKOP: an abstraction layer and user interface for knowledge graphs to support question answering.Bioinformatics2019
31548717Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems.Nat Genet2019
30918448Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions.Biodivers Data J2019
29325126Automated Integration of Trees and Traits: A Case Study Using Paired Fin Loss Across Teleost Fishes.Syst Biol2018
30576485Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems.Database (Oxford)2018
29325126Automated Integration of Trees and Traits: A Case Study Using Paired Fin Loss Across Teleost Fishes.Syst Biol2018
30576485Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems.Database (Oxford)2018
27899636The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species.Nucleic Acids Res2017
28583177Dead simple OWL design patterns.J Biomed Semantics2017
27899636The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species.Nucleic Acids Res2017
28583177Dead simple OWL design patterns.J Biomed Semantics2017
26870952Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals.PLoS One2016
26870952Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals.PLoS One2016
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Collaborators

Christopher J Mungall
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Co-authored papers 22
Hilmar Lapp
Duke University
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Paula M Mabee
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Melissa A Haendel
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Wasila M Dahdul
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Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University
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European Bioinformatics Institute
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The Pennsylvania State University, University Park
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Thomas A Dececchi
Mount Marty University
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Susan M Bello
School of Pharmacy, University of Wisconsin
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Suzanna E Lewis
Lawrence Berkeley National Laboratory
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Monica C Munoz-Torres
University of Colorado Anschutz Medical Campus
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Ramona L Walls
Critical Path Institute
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Kimberly Van Auken
California Institute of Technology
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Sebastian K??hler
Division of Emergency Medicine University of Calgary Calgary Alberta Canada.
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Chris Bizon
Renaissance Computing Institute (RENCI), University of North Carolina at Chapel Hill
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Anne E Thessen
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Release 1.2