Author details

Full Name

Naoki Nariai

Affiliation

ORCID

Career Start Year

2000

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36414910	Sex-Specific Differences in the Transcriptome of the Human Dorsolateral Prefrontal Cortex in Schizophrenia.	Molecular Neurobiology	2023
36778047	Type 1 diabetes risk genes mediate pancreatic beta cell survival in response to proinflammatory cytokines.	Cell Genom	2022
33505025	Systematic analysis of binding of transcription factors to noncoding variants.	Nature	2021
32559231	A crowdsourced set of curated structural variants for the human genome.	PLoS Comput Biol	2020
31064983	Pancreatic islet chromatin accessibility and conformation reveals distal enhancer networks of type 2 diabetes risk.	Nat Commun	2019
31746734	Systematic genetic analysis of the MHC region reveals mechanistic underpinnings of HLA type associations with disease.	Elife	2019
29352165	Construction of full-length Japanese reference panel of class I HLA genes with single-molecule, real-time sequencing.	Pharmacogenomics J	2019
26822323	Monitoring of minimal residual disease in early T-cell precursor acute lymphoblastic leukaemia by next-generation sequencing.	British Journal of Haematology	2017
28388874	Pgltools: a genomic arithmetic tool suite for manipulation of Hi-C peak and other chromatin interaction data.	BMC Bioinformatics	2017
28388430	Large-Scale Profiling Reveals the Influence of Genetic Variation on Gene Expression in Human Induced Pluripotent Stem Cells.	Cell Stem Cell	2017
28410642	iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types.	Stem Cell Reports	2017
28564705	A Histologic Categorization of Aqueous Outflow Routes in Familial Open-Angle Glaucoma and Associations With Mutations in the MYOC Gene in Japanese Patients.	Investigative Ophthalmology and Visual Science	2017
29074555	Efficient Prioritization of Multiple Causal eQTL Variants via Sparse Polygenic Modeling.	Genetics	2017
27586631	Short tandem repeat number estimation from paired-end reads for multiple individuals by considering coalescent tree.	BMC Genomics	2016
26818838	A Bayesian approach for estimating allele-specific expression from RNA-Seq data with diploid genomes.	BMC Genomics	2016
27764769	Establishing the involvement of the novel gene AGBL5 in retinitis pigmentosa by whole genome sequencing.	Physiol Genomics	2016
26108142	Japonica array: improved genotype imputation by designing a population-specific SNP array with 1070 Japanese individuals.	J Hum Genet	2015
25708870	HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data.	BMC Genomics	2015
25707811	Estimating copy numbers of alleles from population-scale high-throughput sequencing data.	BMC Bioinformatics	2015
27081555	iJGVD: an integrative Japanese genome variation database based on whole-genome sequencing.	Hum Genome Var	2015
26292667	Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals.	Nat Commun	2015
24782121	Identification of acquired mutations by whole-genome sequencing in GATA-2 deficiency evolving into myelodysplasia and acute leukemia.	Annals of Hematology	2014
25560536	TIGAR2: sensitive and accurate estimation of transcript isoform expression with longer RNA-Seq reads.	BMC Genomics	2014
25103311	SUGAR: graphical user interface-based data refiner for high-throughput DNA sequencing.	BMC Genomics	2014
25109789	Validation of multiple single nucleotide variation calls by additional exome analysis with a semiconductor sequencer to supplement data of whole-genome sequencing of a human population.	BMC Genomics	2014
24564972	iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data.	BMC Systems Biology	2013
24086284	Profiling of microRNA in human and mouse ES and iPS cells reveals overlapping but distinct microRNA expression patterns.	PLoS One	2013
24002111	A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads.		2013
23821651	TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference.		2013
23382209	Wnt3a stimulates maturation of impaired neutrophils developed from severe congenital neutropenia patient-derived pluripotent stem cells.	Proc Natl Acad Sci U S A	2013
23045694	Transposon mutagenesis identifies genes that transform neural stem cells into glioma-initiating cells.	Proc Natl Acad Sci U S A	2012
18721473	Integration of relational and hierarchical network information for protein function prediction.	BMC Bioinformatics	2008
18546485	Context specific protein function prediction.	Genome Inform	2007
17396164	Probabilistic protein function prediction from heterogeneous genome-wide data.	PLoS One	2007
16204105	Estimating gene regulatory networks and protein-protein interactions of Saccharomyces cerevisiae from multiple genome-wide data.	Bioinformatics	2005
14992515	Using protein-protein interactions for refining gene networks estimated from microarray data by Bayesian networks.	Pac Symp Biocomput	2004
10823737	Active-oxygen involvement in canine NK-mediated cytotoxicity.	Journal of Veterinary Medical Science	2000