Author details

Full Name

Tim Putman

Affiliation

University of Colorado

ORCID

Career Start Year

2012

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36747660	The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences.	bioRxiv	2023
37502882	Predicting nutrition and environmental factors associated with female reproductive disorders using a knowledge graph and random forests.	medRxiv	2023
37389415	KG-Hub-building and exchanging biological knowledge graphs.	Bioinformatics	2023
37076585	The Ontology of Biological Attributes (OBA)-computational traits for the life sciences.	Mamm Genome	2023
36125173	Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science.	Clin Transl Sci	2022
35616100	A Simple Standard for Sharing Ontological Mappings (SSSOM).	Database (Oxford)	2022
32180547	Wikidata as a knowledge graph for the life sciences.	Elife	2020
30985891	ChlamBase: a curated model organism database for the Chlamydia research community.	Database (Oxford)	2019
31211397	ChlamBase: a curated model organism database for the Chlamydia research community.	Database (Oxford)	2019
28368459	Demonstration of Persistent Infections and Genome Stability by Whole-Genome Sequencing of Repeat-Positive, Same-Serovar Chlamydia trachomatis Collected From the Female Genital Tract.	J Infect Dis	2017
28365742	WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata.	Database (Oxford)	2017
27022157	Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes.	Database (Oxford)	2016
27246568	Interrogating Genes That Mediate Chlamydia trachomatis Survival in Cell Culture Using Conditional Mutants and Recombination.	J Bacteriol	2016
27154141	High-performance web services for querying gene and variant annotation.	Genome Biol	2016
27430273	Beyond Tryptophan Synthase: Identification of Genes That Contribute to Chlamydia trachomatis Survival during Gamma Interferon-Induced Persistence and Reactivation.	Infect Immun	2016
26989148	Wikidata as a semantic framework for the Gene Wiki initiative.	Database (Oxford)	2016
26087404	Application of a nanoflare probe specific to a latency associated transcript for isolation of KHV latently infected cells.	Virus Res	2015
23842467	Culture-independent sequence analysis of Chlamydia trachomatis in urogenital specimens identifies regions of recombination and in-patient sequence mutations.	Microbiology (Reading)	2013
22644029	Resistance to a novel antichlamydial compound is mediated through mutations in Chlamydia trachomatis secY.	Antimicrob Agents Chemother	2012
23021301	Sequence and comparative analysis of the genome of HSV-1 strain McKrae.	Virology	2012

1 - 20 of 20

Eric S Rasche

Clinical Bioinformatics Group, Erasmus Medical Center

Career Start Year 2015

Number of shared co-authors 5

Robert Eveleigh

Victor Philip Dahdaleh Institute of Genomic Medicine at McGill University

Career Start Year 2011

Number of shared co-authors 1

Suvarna Nadendla

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 2010

Number of shared co-authors 8

Cesar Arze

University of Hohenheim

Career Start Year 2010

Number of shared co-authors 4

Jeremy Goecks

Oregon Health & Science University

Career Start Year 2010

Number of shared co-authors 7

Chien-Chi Lo

Los Alamos National Laboratory

Career Start Year 2009

Number of shared co-authors 2

Bin Hu

Los Alamos National Laboratory

Career Start Year 2008

Number of shared co-authors 4

Heather Huot Creasy

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 2007

Number of shared co-authors 4

Marcus C Chibucos

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 2006

Number of shared co-authors 11

Brandi L Cantarel

University of Texas Southwestern Medical Center

Career Start Year 2006

Number of shared co-authors 2

Christopher J Fields

University of Illinois Urbana-Champaign

Career Start Year 2005

Number of shared co-authors 3

Joshua Orvis

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 2004

Number of shared co-authors 3

Maulik Shukla

University of Chicago

Career Start Year 2003

Number of shared co-authors 2

Samuel V Angiuoli

Personal Genome Diagnostics Inc.

Career Start Year 2001

Number of shared co-authors 4

Neil Hall

Earlham Institute

Career Start Year 2000

Number of shared co-authors 3

Aye Wollam

McDonnell Genome Institute, Washington University School of Medicine

Career Start Year 2000

Number of shared co-authors 7

Karsten Hokamp

Smurfit Institute of Genetics, Trinity College of Dublin

Career Start Year 1999

Number of shared co-authors 5

Nicola Mulder

University of Cape Town

Career Start Year 1999

Number of shared co-authors 12

Robert D Finn

European Bioinformatics Institute

Career Start Year 1999

Number of shared co-authors 2

Jonathan Crabtree

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 1998

Number of shared co-authors 1

Nicholas J Loman

University of Birmingham

Career Start Year 1998

Number of shared co-authors 0

Ana Tereza Ribeiro de Vasconcelos

The National Laboratory for Scientific Computing (LNCC)

Career Start Year 1997

Number of shared co-authors 0

Thomas Brettin

University of Chicago

Career Start Year 1996

Number of shared co-authors 2

Fiona S L Brinkman

Simon Fraser University

Career Start Year 1995

Number of shared co-authors 3

John Parkinson

The Hospital for Sick Children

Career Start Year 1994

Number of shared co-authors 1

Jason E McDermott

Pacific Northwest National Laboratory

Career Start Year 1993

Number of shared co-authors 0

Granger Sutton

J. Craig Venter Institute

Career Start Year 1993

Number of shared co-authors 1

Steven L Salzberg

Center for Computational Biology, Johns Hopkins University

Career Start Year 1992

Number of shared co-authors 2

Owen White

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 1988

Number of shared co-authors 8

Lincoln Stein

Ontario Institute for Cancer Research, University Avenue

Career Start Year 1986

Number of shared co-authors 23

row(s) 1 - 30 of 30

Andrew I Su

The Scripps Research Institute

Co-authored papers 7

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 7

Chunlei Wu

The Scripps Research Institute

Co-authored papers 6

Melissa A Haendel

Co-authored papers 6

Melissa A Haendel

American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison

Co-authored papers 6

Monica C Munoz-Torres

University of Colorado Anschutz Medical Campus

Co-authored papers 5

Andra Waagmeester

Maastricht University

Co-authored papers 5

Nomi L Harris

Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University

Co-authored papers 5

Benjamin M Good

Lawrence Berkeley National Laboratory

Co-authored papers 5

Gregory S Stupp

The Scripps Research Institute

Co-authored papers 4

Anne E Thessen

Biodiversity Information Standards, Coastal and Estuarine Research Federation, Oregon State University, Phycological Society of America, Society of Professional Consultants, The Data Detektiv, University of Colorado Anschutz Medical Campus, University of Maryland College Park, Women in the Enterprise of Science and Technology

Co-authored papers 4

Julie A McMurry

University of Colorado - Anschutz Medical Campus

Co-authored papers 3

Peter N Robinson

William Harvey Research Institute, Queen Mary University of London

Co-authored papers 3

David Osumi-Sutherland

European Bioinformatics Institute

Co-authored papers 3

Susan M Bello

School of Pharmacy, University of Wisconsin