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Author Details

Nikos C Kyrpides
1990
690
95
PMIDPaper TitleJournal TitlePublished Year
37930866IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata.Nucleic Acids Res2024
36536072Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot.ISME J2023
36399502IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata.Nucleic Acids Res2023
36382399The IMG/M data management and analysis system v.7: content updates and new features.Nucleic Acids Res2023
36318257Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9.Nucleic Acids Res2023
37735266Identification of mobile genetic elements with geNomad.Nat Biotechnol2023
37811892NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes.2023
38047235Identification of over ten thousand candidate structured RNAs in viruses and phages.Comput Struct Biotechnol J2023
36959975Exploring microbial functional biodiversity at the protein family level-From metagenomic sequence reads to annotated protein clusters.Front Bioinform2023
36696902Mining metatranscriptomes reveals a vast world of viroid-like circular RNAs.Cell2023
36794865Standardized naming of microbiome samples in Genomes OnLine Database.Database (Oxford)2023
36925474Discovery of a novel filamentous prophage in the genome of the <i>Mimosa pudica</i> microsymbiont <i>Cupriavidus taiwanensis</i> STM 6018.Front Microbiol2023
34969995Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution.ISME J2022
36251644Multiomics in the central Arctic Ocean for benchmarking biodiversity change.PLoS Biol2022
35579457Sodalis ligni Strain 159R Isolated from an Anaerobic Lignin-Degrading Consortium.Microbiol Spectr2022
35495676The Genome of the Acid Soil-Adapted Strain <i>Rhizobium favelukesii</i> OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host.Front Microbiol2022
35491944Identifying candidate structured RNAs in CRISPR operons.RNA Biology2022
36138466Metagenomics-resolved genomics provides novel insights into chitin turnover, metabolic specialization, and niche partitioning in the octocoral microbiome.Microbiome2022
36069554Draft Metagenome Sequences of the <i>Sphagnum</i> (Peat Moss) Microbiome from Ambient and Warmed Environments across Europe.Microbiol Resour Announc2022
36123347Structural characterization of a soil viral auxiliary metabolic gene product - a functional chitosanase.Nat Commun2022
36259954Genome Sequencing Suggests Diverse Secondary Metabolism in Coral-Associated Aquimarina megaterium.Microbiology Resource Announcements2022
36778052Expanding the genomic encyclopedia of <i>Actinobacteria</i> with 824 isolate reference genomes.Cell Genom2022
36748409gen. nov., sp. nov., an endophyte from a pine tree of the family , class .2022
34531387The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole.Nat Commun2021
34080906Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria.Microbiol Resour Announc2021
34017316Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of <i>Thermoflexus hugenholtzii</i> and Three Candidate Species From China and Japan.Front Microbiol2021
34168315Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome.Nat Microbiol2021
34006627DOE JGI Metagenome Workflow.mSystems2021
33471063VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families.2021
33468697Atypical Divergence of SARS-CoV-2 Orf8 from Orf7a within the Coronavirus Lineage Suggests Potential Stealthy Viral Strategies in Immune Evasion.mBio2021
34152267sp. nov., an airborne bacterium isolated from King George Island, Antarctica.International Journal of Systematic and Evolutionary Microbiology2021
33766108Metagenomic insights into the taxonomy, function, and dysbiosis of prokaryotic communities in octocorals.Microbiome2021
33208936Publisher Correction: A genomic catalog of Earth's microbiomes.Nat Biotechnol2021
33152092Genomes OnLine Database (GOLD) v.8: overview and updates.Nucleic Acids Res2021
33137183IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses.Nucleic Acids Res2021
32690973A unified catalog of 204,938 reference genomes from the human gut microbiome.Nat Biotechnol2021
33349699CheckV assesses the quality and completeness of metagenome-assembled viral genomes.Nat Biotechnol2021
33119741The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities.Nucleic Acids Res2021
34465172Illuminating the Virosphere Through Global Metagenomics.2021
34435855The Roseibium album (Labrenzia alba) Genome Possesses Multiple Symbiosis Factors Possibly Underpinning Host-Microbe Relationships in the Marine Benthos.Microbiology Resource Announcements2021
34541621Frigoriflavimonas asaccharolytica gen. nov., sp. nov., a novel psychrophilic esterase and protease producing bacterium isolated from Antarctica.Antonie van Leeuwenhoek2021
32772914Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community.Microbiome2020
32143559Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil.BMC Genomics2020
31914924Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species.BMC Genomics2020
31968354Giant virus diversity and host interactions through global metagenomics.Nature2020
32373076Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of .Frontiers in Microbiology2020
31844948Genome analysis of the marine bacterium Kiloniella laminariae and first insights into comparative genomics with related Kiloniella species.Archives of Microbiology2020
31896648Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome.Microbiol Resour Announc2020
32061251Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem.Microbiome2020
32001557One Complete and Seven Draft Genome Sequences of Subdivision 1 and 3 <i>Acidobacteria</i> Isolated from Soil.Microbiol Resour Announc2020
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