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Author Details

Bryan R Lajoie
NASA Ames Research Center
2009
56
43
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37886447Viral activation and ecological restructuring characterize a microbiome axis of spaceflight-associated immune activation.Res Sq2023
37989525Enhancer-driven 3D chromatin domain folding modulates transcription in human mammary tumor cells.Life Sci Alliance2023
35882841An automated 13.5â¿¿hour system for scalable diagnosis and acute management guidance for genetic diseases.Nat Commun2022
35720974PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions.Cell Genom2022
34077649Rapid Sequencing-Based Diagnosis of Thiamine Metabolism Dysfunction Syndrome.N Engl J Med2021
32345345ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing data.Genome Biol2020
31912665Genome sequencing in persistently unsolved white matter disorders.Ann Clin Transl Neurol2020
30293986Copy-number variants in clinical genome sequencing: deployment and interpretation for rare and undiagnosed disease.Genet Med2019
31582763Highly structured homolog pairing reflects functional organization of the Drosophila genome.Nat Commun2019
31582744The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos.Nat Commun2019
31375785Publisher Correction: Heterochromatin drives compartmentalization of inverted and conventional nuclei.Nature2019
30982609Bi-allelic CSF1R Mutations Cause Skeletal Dysplasia of Dysosteosclerosis-Pyle Disease Spectrum and Degenerative Encephalopathy with Brain Malformation.Am J Hum Genet2019
30890172Measuring the reproducibility and quality of Hi-C data.Genome Biol2019
31168090Heterochromatin drives compartmentalization of inverted and conventional nuclei.Nature2019
31134279ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions.Bioinformatics2019
30415953Higher-Order Organization Principles of Pre-translational mRNPs.Mol Cell2018
30202056Integrative detection and analysis of structural variation in cancer genomes.Nat Genet2018
28887402Detection of long repeat expansions from PCR-free whole-genome sequence data.Genome Res2017
28842795X-linked hypomyelination with spondylometaphyseal dysplasia (H-SMD) associated with mutations in AIFM1.Neurogenetics2017
288631385C analysis of the Epidermal Differentiation Complex locus reveals distinct chromatin interaction networks between gene-rich and gene-poor TADs in skin epithelial cells.PLoS Genet2017
26804913Extremely Long-Range Chromatin Loops Link Topological Domains to Facilitate a Diverse Antibody Repertoire.Cell Rep2016
27168434Patterns of Growth and Decline in Lung Function in Persistent Childhood Asthma.N Engl J Med2016
27437574Structural organization of the inactive X chromosome in the mouse.Nature2016
27435934SMARCA4 regulates gene expression and higher-order chromatin structure in proliferating mammary epithelial cells.Genome Res2016
27514584RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells.Biochim Biophys Acta2016
27367781Genetics and Genomics of Longitudinal Lung Function Patterns in Individuals with Asthma.Am J Respir Crit Care Med2016
26940867Activation of proto-oncogenes by disruption of chromosome neighborhoods.Science2016
26748519Invariant TAD Boundaries Constrain Cell-Type-Specific Looping Interactions between Promoters and Distal Elements around the CFTR Locus.Am J Hum Genet2016
25448293The Hitchhiker's guide to Hi-C analysis: practical guidelines.Methods2015
26253537Condensin promotes the juxtaposition of DNA flanking its loading site in Bacillus subtilis.Genes Dev2015
26655901The Conformation of Yeast Chromosome III Is Mating Type Dependent and Controlled by the Recombination Enhancer.Cell Rep2015
26431028High-Affinity Sites Form an Interaction Network to Facilitate Spreading of the MSL Complex across the X Chromosome in Drosophila.Mol Cell2015
26619908HiC-Pro: an optimized and flexible pipeline for Hi-C data processing.Genome Biol2015
26365489Genome-wide maps of nuclear lamina interactions in single human cells.Cell2015
26415882Chromatin interaction analysis reveals changes in small chromosome and telomere clustering between epithelial and breast cancer cells.Genome Biol2015
26119342Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C.Cell2015
26030525Condensin-driven remodelling of X chromosome topology during dosage compensation.Nature2015
23706625Architectural protein subclasses shape 3D organization of genomes during lineage commitment.Cell2013
24240234Flexible ordering of antibody class switch and V(D)J joining during B-cell ontogeny.Genes Dev2013
24200812Organization of the mitotic chromosome.Science2013
24002784Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments.Genome Res2013
23791784Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network.Mol Cell2013
22341456Spatial organization of the mouse genome and its role in recurrent chromosomal translocations.Cell2012
22941365Iterative correction of Hi-C data reveals hallmarks of chromosome organization.Nat Methods2012
22955621The long-range interaction landscape of gene promoters.Nature2012
22955617The accessible chromatin landscape of the human genome.Nature2012
22889292An encyclopedia of mouse DNA elements (Mouse ENCODE).Genome Biol2012
22923296HiTC: exploration of high-throughput 'C' experiments.Bioinformatics2012
22495304Spatial partitioning of the regulatory landscape of the X-inactivation centre.Nature2012
22555433MORC family ATPases required for heterochromatin condensation and gene silencing.Science2012
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Collaborators

Job Dekker
University of Massachusetts Chan Medical School
Co-authored papers 43
Leonid A Mirny
Co-authored papers 9
Amartya Sanyal
Nanyang Technological University
Co-authored papers 9
Maxim Imakaev
Co-authored papers 8
John A Stamatoyannopoulos
Altius Institute for Biomedical Sciences
Co-authored papers 7
Edith Heard
Institut Curie, PSL Research University, CNRS UMR 5, INSERM U934
Co-authored papers 5
David R Bentley
Illumina Cambridge Ltd.
Co-authored papers 4
Michael A Eberle
Illumina Inc.
Co-authored papers 4
James Taylor
Johns Hopkins University
Co-authored papers 3
Peter J Sabo
University of Washington
Co-authored papers 3
Hakan Ozadam
Co-authored papers 3
Richard Sandstrom
Altius Institute for Biomedical Sciences
Co-authored papers 3
Marc A Marti-Renom
Universitat Pompeu Fabra (UPF)
Co-authored papers 3
Gary S Stein
University of Vermont
Co-authored papers 3
Jane B Lian
University of Vermont
Co-authored papers 3
Emmanuel Barillot
Institut Curie, Universite PSL
Co-authored papers 3
Rajinder Kaul
Altius Institute for Biomedical Sciences
Co-authored papers 3
Andre J van Wijnen
Co-authored papers 3
Ross C Hardison
Co-authored papers 2
Howard Y Chang
Center for Personal Dynamic Regulomes, Stanford University
Co-authored papers 2
Kristen Lee
Altius Institute for Biomedical Sciences
Co-authored papers 2
Robert E Thurman
University of Washington
Co-authored papers 2
Vaughn Roach
Co-authored papers 2
Alvin T Kho
Brigham and Women's Hospital, Harvard Medical School, Boston Children's Hospital
Co-authored papers 2
Isaac B Houston
Co-authored papers 2
Ashok Veeraraghavan
Rice University
Co-authored papers 2
Stephen F Kingsmore
Rady Children's Institute for Genomic Medicine
Co-authored papers 2
Audra K Johnson
Altius Institute for Biomedical Sciences
Co-authored papers 2
Theresa K Canfield
University of Washington
Co-authored papers 2
David Dimmock
Rady Children's Institute for Genomic Medicine
Co-authored papers 2
Release 1.2