Skip to Main Content

Author Details

Xiaorong Wang
University of California Irvine
2003
52
30
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37214852Lipid-anchored Proteasomes Control Membrane Protein Homeostasis.bioRxiv2023
37595557Molecular mechanism for activation of the 26S proteasome by ZFAND5.Mol Cell2023
37214989Molecular mechanisms for activation of the 26S proteasome.bioRxiv2023
35193351Developing a Targeted Quantitative Strategy for Sulfoxide-Containing MS-Cleavable Cross-Linked Peptides to Probe Conformational Dynamics of Protein Complexes.Anal Chem2022
35235311Two-Dimensional Fractionation Method for Proteome-Wide Cross-Linking Mass Spectrometry Analysis.Anal Chem2022
34314389Anterograde regulation of mitochondrial genes and FGF21 signaling by hepatic LSD1.JCI Insight2021
33603165Proteasome regulation by reversible tyrosine phosphorylation at the membrane.Oncogene2021
33915260Enabling Photoactivated Cross-Linking Mass Spectrometric Analysis of Protein Complexes by Novel MS-Cleavable Cross-Linkers.Mol Cell Proteomics2021
34609515Purification of MAP-kinase protein complexes and identification of candidate components by XL-TAP-MS.Plant Physiol2021
34550675Developing a Bimolecular Affinity Purification Strategy to Isolate 26S Proteasome Holocomplexes for Complex-Centric Proteomic Analysis.Anal Chem2021
34349018Protein interaction landscapes revealed by advanced in vivo cross-linking-mass spectrometry.Proc Natl Acad Sci U S A2021
31843888Reversible phosphorylation of Rpn1 regulates 26S proteasome assembly and function.Proc Natl Acad Sci U S A2020
30723094Probing H<sub>2</sub>O<sub>2</sub>-mediated Structural Dynamics of the Human 26S Proteasome Using Quantitative Cross-linking Mass Spectrometry (QXL-MS).Mol Cell Proteomics2019
31138654Microhomology-based CRISPR tagging tools for protein tracking, purification, and depletion.J Biol Chem2019
29395064Senataxin Mutation Reveals How R-Loops Promote Transcription by Blocking DNA Methylation at Gene Promoters.Mol Cell2018
30242723Dissecting Dynamic and Heterogeneous Proteasome Complexes Using In Vivo Cross-Linking-Assisted Affinity Purification and Mass Spectrometry.Methods Mol Biol2018
30108179Human proteins that interact with RNA/DNA hybrids.Genome Res2018
28821611The proteasome-interacting Ecm29 protein disassembles the 26S proteasome in response to oxidative stress.J Biol Chem2017
28292943Molecular Details Underlying Dynamic Structures and Regulation of the Human 26S Proteasome.Mol Cell Proteomics2017
28625484Nuclear factor-erythroid-2 related transcription factor-1 (Nrf1) is regulated by O-GlcNAc transferase.Free Radic Biol Med2017
28768827Ubiquitin orchestrates proteasome dynamics between proliferation and quiescence in yeast.Mol Biol Cell2017
27371223Corrigendum: Divergence of a conserved elongation factor and transcription regulation in budding and fission yeast.Genome Res2016
26655835Site-specific proteasome phosphorylation controls cell proliferation and tumorigenesis.Nat Cell Biol2016
27638543RNA-DNA sequence differences in Saccharomyces cerevisiae.Genome Res2016
27197211Divergence of a conserved elongation factor and transcription regulation in budding and fission yeast.Genome Res2016
27114451Characterization of Dynamic UbR-Proteasome Subcomplexes by In vivo Cross-linking (X) Assisted Bimolecular Tandem Affinity Purification (XBAP) and Label-free Quantitation.Mol Cell Proteomics2016
26202599Genetic variation in insulin-induced kinase signaling.Mol Syst Biol2015
24561252RNA-DNA differences are generated in human cells within seconds after RNA exits polymerase II.Cell Rep2014
25253489A new in vivo cross-linking mass spectrometry platform to define protein-protein interactions in living cells.Mol Cell Proteomics2014
25225332RNA binding and core complexes constitute the U-insertion/deletion editosome.Mol Cell Biol2014
25059613Defining dynamic protein interactions using SILAC-based quantitative mass spectrometry.Methods Mol Biol2014
24183664ADAR regulates RNA editing, transcript stability, and gene expression.Cell Rep2013
21474072Pentatricopeptide repeat proteins stimulate mRNA adenylation/uridylation to activate mitochondrial translation in trypanosomes.Mol Cell2011
21949367UBLCP1 is a 26S proteasome phosphatase that regulates nuclear proteasome activity.Proc Natl Acad Sci U S A2011
21596952Widespread RNA and DNA sequence differences in the human transcriptome.Science2011
21543789Oxidative stress-mediated regulation of proteasome complexes.Mol Cell Proteomics2011
21285413Quantitative profiling of in vivo-assembled RNA-protein complexes using a novel integrated proteomic approach.Mol Cell Proteomics2011
20362585Mechanism of U insertion RNA editing in trypanosome mitochondria: the bimodal TUTase activity of the core complex.J Mol Biol2010
21139140Regulation of the 26S proteasome complex during oxidative stress.Sci Signal2010
20856902Polymorphic cis- and trans-regulation of human gene expression.PLoS Biol2010
20445003Profiling of protein interaction networks of protein complexes using affinity purification and quantitative mass spectrometry.Mol Cell Proteomics2010
19273586Mutational analysis of the Sir3 BAH domain reveals multiple points of interaction with nucleosomes.Mol Cell Biol2009
17934176Identifying dynamic interactors of protein complexes by quantitative mass spectrometry.Mol Cell Proteomics2008
18850735Characterization of the human COP9 signalosome complex using affinity purification and mass spectrometry.J Proteome Res2008
18781797Quantitative analysis of global ubiquitination in HeLa cells by mass spectrometry.J Proteome Res2008
18951088Guide RNA-binding complex from mitochondria of trypanosomatids.Mol Cell2008
18370112Tandem affinity purification combined with mass spectrometry to identify components of protein complexes.Methods Mol Biol2008
17323924Mass spectrometric characterization of the affinity-purified human 26S proteasome complex.Biochemistry2007
17941820Proteomics of proteasome complexes and ubiquitinated proteins.Expert Rev Proteomics2007
16823883HB tag modules for PCR-based gene tagging and tandem affinity purification in Saccharomyces cerevisiae.Yeast2006
  • 1 - 50 of 52

Recommended Authors

Yi Shi
College of Medicine, Yangzhou University
Career Start Year 2010
Number of shared co-authors 4
Florian Stengel
University of Konstanz Universitatsstrasse 10
Career Start Year 2009
Number of shared co-authors 11
Danielle L Swaney
J. David Gladstone Institutes
Career Start Year 2007
Number of shared co-authors 2
Kelly R Molloy
The Rockefeller University
Career Start Year 2006
Number of shared co-authors 1
Ajay A Vashisht
David Geffen School of Medicine, University of California los angeles
Career Start Year 2005
Number of shared co-authors 2
Judit Vill??n
University of Washington
Career Start Year 2001
Number of shared co-authors 0
Jeffrey R Johnson
Gladstone Institutes
Career Start Year 2001
Number of shared co-authors 2
Gerard Cagney
Conway Institute of Biomedical and Biomolecular Sciences, University College Dublin
Career Start Year 2000
Number of shared co-authors 2
Guoqing Zhong
University of Toronto
Career Start Year 2000
Number of shared co-authors 1
Jeroen A A Demmers
Erasmus Medical Center
Career Start Year 2000
Number of shared co-authors 0
Feixia Chu
University of New Hampshire
Career Start Year 1999
Number of shared co-authors 1
Juri Rappsilber
Institute for Biotechnology, Technical University Berlin
Career Start Year 1998
Number of shared co-authors 7
Nevan J Krogan (CM4AI)
University of California San Francisco
Career Start Year 1998
Number of shared co-authors 7
Rasmus Hartmann-Petersen
University of Copenhagen
Career Start Year 1998
Number of shared co-authors 0
Mark Scalf
University of Wisconsin-Madison College of Letters and Sciences
Career Start Year 1997
Number of shared co-authors 0
James A Wohlschlegel
David Geffen School of Medicine, University of California Los Angeles
Career Start Year 1996
Number of shared co-authors 2
Anna Shevchenko
Max Plank Institute of Molecular Cell Biology and Genetics
Career Start Year 1996
Number of shared co-authors 1
Brian Raught
Princess Margaret Cancer Centre, University Health Network
Career Start Year 1994
Number of shared co-authors 1
Anne-Claude Gingras
Lunenfeld-Tanenbaum Research Institute
Career Start Year 1994
Number of shared co-authors 3
Matthias Gstaiger
Institute of Molecular Systems Biology, ETH Zurich
Career Start Year 1994
Number of shared co-authors 3
Jens S Andersen
University of Southern Denmark
Career Start Year 1993
Number of shared co-authors 2
Steven P Gygi
Harvard Medical School
Career Start Year 1991
Number of shared co-authors 3
Andrew Emili
Boston University School of Medicine, Boston University
Career Start Year 1991
Number of shared co-authors 1
Karl Mechtler
IMP-Institute of Molecular Pathology
Career Start Year 1990
Number of shared co-authors 7
Matthias Mann
Max-Planck Institute of Biochemistry
Career Start Year 1989
Number of shared co-authors 7
Hediye Erdjument-Bromage
Neuroscience Institute, NYU Grossman School of Medicine
Career Start Year 1984
Number of shared co-authors 0
Henning Urlaub
Max Planck Institute for Multidisciplinary Sciences
Career Start Year 1982
Number of shared co-authors 4
J. Wade Harper
Harvard Medical School
Career Start Year 1981
Number of shared co-authors 1
Ryuji Kobayashi
Tokyo University of Science
Career Start Year 1979
Number of shared co-authors 0
John R Yates
TheScripps Research Institute
Career Start Year 1960
Number of shared co-authors 3

Collaborators

Lan Huang
University of California Irvine
Co-authored papers 38
Clinton Yu
University of California Irvine
Co-authored papers 11
Scott D Rychnovsky
University of California irvine
Co-authored papers 7
Xing Guo
Life Sciences Institute, Zhejiang University
Co-authored papers 6
Robyn M Kaake
J. David Gladstone Institutes
Co-authored papers 5
Jack E Dixon
University of California
Co-authored papers 4
Alexander S Huszagh
University of California irvine
Co-authored papers 3
Eric J Novitsky
University of California irvine
Co-authored papers 3
Yingying Yang
University of California irvine
Co-authored papers 3
James L Engel
David Geffen School of Medicine, University of California los angeles
Co-authored papers 2
Rosa Viner
University of California (Davis)
Co-authored papers 2
Peter Cimermancic
Verily Life Sciences LLC
Co-authored papers 2
Ilan E Chemmama
University of California san francisco
Co-authored papers 2
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 2
Kylie J Walters
Center for Cancer Research, National Cancer Institute, National Institutes of Health
Co-authored papers 1
Mingyao Li
Co-authored papers 1
Lauren K Brady
Emory University School of Medicine
Co-authored papers 1
Yue Xu
South China University of Technology
Co-authored papers 1
Fred van Leeuwen
Netherlands Cancer Institute, University of Amsterdam
Co-authored papers 1
Markus Hafner
National Institute of Arthritis and Musculoskeletal and Skin Diseases
Co-authored papers 1
Yihong Ye
National Institute of Diabetes, National Institutes of Health
Co-authored papers 1
Eri Sakata
Max Planck Institute of Biochemistry
Co-authored papers 1
Craig B Gutierrez
University of California irvine
Co-authored papers 1
Abdullah Kahraman
University of Zurich
Co-authored papers 1
Sarah A Block
University of California irvine
Co-authored papers 1
Paolo Nanni
Functional Genomics Center Zurich (FGCZ)-University of Zurich/ETH Zurich
Co-authored papers 1
Florian Beck
Max Planck Institute of Biochemistry
Co-authored papers 1
Wolfgang Baumeister
Max Planck Institute of Biochemistry
Co-authored papers 1
Liye Zhang
ShanghaiTech University
Co-authored papers 1
Nikita Chopra
Schrodinger Inc.
Co-authored papers 1
Release 1.2