Author details

Full Name

Joshua Gould

Affiliation

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37034735	A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain.	bioRxiv	2023
35902743	Single-nucleus and spatial transcriptome profiling of pancreatic cancer identifies multicellular dynamics associated with neoadjuvant treatment.	Nat Genet	2022
33915569	COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets.	Nature	2021
33655247	A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2.	bioRxiv	2021
33654293	Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics.	Nat Med	2021
32719530	Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq.	Nat Methods	2020
32755564	A Distinct Transcriptional Program in Human CAR T Cells Bearing the 4-1BB Signaling Domain Revealed by scRNA-Seq.	Mol Ther	2020
30712874	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming.	Cell	2019
30203022	The GCTx format and cmap{Py, R, M, J} packages: resources for optimized storage and integrated traversal of annotated dense matrices.		2019
31501547	High-definition spatial transcriptomics for in situ tissue profiling.	Nat Methods	2019
30849376	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming.	Cell	2019
29655704	A Library of Phosphoproteomic and Chromatin Signatures for Characterizing Cellular Responses to Drug Perturbations.	Cell Syst	2018
29195078	A Next Generation Connectivity Map: L1000 Platform and the First 1,000,000 Profiles.	Cell	2017
28388612	The Drug Repurposing Hub: a next-generation drug library and information resource.	Nat Med	2017
27807282	Genetic interrogation of circulating multiple myeloma cells at single-cell resolution.	Sci Transl Med	2016
26928769	High-throughput identification of genotype-specific cancer vulnerabilities in mixtures of barcoded tumor cell lines.	Nat Biotechnol	2016
27325891	Targeting MTHFD2 in acute myeloid leukemia.	J Exp Med	2016
26482930	Harnessing Connectivity in a Large-Scale Small-Molecule Sensitivity Dataset.	Cancer Discov	2015
24434212	Widespread genetic heterogeneity in multiple myeloma: implications for targeted therapy.	Cancer Cell	2014
23333348	Prognostic gene expression signature for patients with hepatitis C-related early-stage cirrhosis.	Gastroenterology	2013
22763439	Tumour micro-environment elicits innate resistance to RAF inhibitors through HGF secretion.	Nature	2012
22343534	Discovery and prioritization of somatic mutations in diffuse large B-cell lymphoma (DLBCL) by whole-exome sequencing.	Proc Natl Acad Sci U S A	2012
21746896	Systematic investigation of genetic vulnerabilities across cancer cell lines reveals lineage-specific dependencies in ovarian cancer.	Proc Natl Acad Sci U S A	2011
17644558	GSEA-P: a desktop application for Gene Set Enrichment Analysis.	Bioinformatics	2007
16642009	GenePattern 2.0.	Nat Genet	2006
16709585	Comparative gene marker selection suite.	Bioinformatics	2006
16030072	GeneCruiser: a web service for the annotation of microarray data.	Bioinformatics	2005