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Author Details

George Karypis
University of Minnesota
2003
49
19
PMIDPaper TitleJournal TitlePublished Year
35834453TraverseNet: Unifying Space and Time in Message Passing for Traffic Forecasting.IEEE Trans Neural Netw Learn Syst2024
35304504A knowledge graph of clinical trials ([Formula: see text]).Sci Rep2022
33819161Anomaly Detection on Attributed Networks via Contrastive Self-Supervised Learning.IEEE Trans Neural Netw Learn Syst2022
35156325Benchmarking Accuracy and Generalizability of Four Graph Neural Networks Using Large In Vitro ADME Datasets from Different Chemical Spaces.Mol Inform2022
34693143DGL-LifeSci: An Open-Source Toolkit for Deep Learning on Graphs in Life Science.ACS Omega2021
30415424Detecting significant genotype-phenotype association rules in bipolar disorder: market research meets complex genetics.Int J Bipolar Disord2018
27374913Augmenting Chinese hamster genome assembly by identifying regions of high confidence.Biotechnol J2016
24249083Exploring the transcriptome space of a recombinant BHK cell line through next generation sequencing.Biotechnol Bioeng2014
23184763Coarse- and fine-grained models for proteins: evaluation by decoy discrimination.Proteins2013
23929871Pareto optimal pairwise sequence alignment.IEEE/ACM Trans Comput Biol Bioinform2013
22974585Multivariate analysis of cell culture bioprocess data--lactate consumption as process indicator.J Biotechnol2012
22373092Discerning key parameters influencing high productivity and quality through recognition of patterns in process data.BMC Proc2011
20416347Mining manufacturing data for discovery of high productivity process characteristics.J Biotechnol2010
20955611Genome-wide inference of regulatory networks in Streptomyces coelicolor.BMC Genomics2010
20536191Assessing synthetic accessibility of chemical compounds using machine learning methods.J Chem Inf Model2010
20183873TOPTMH: topology predictor for transmembrane alpha-helices.J Bioinform Comput Biol2010
19132744Mining transcriptome data for function-trait relationship of hyper productivity of recombinant antibody.Biotechnol Bioeng2009
19842624Multi-assay-based structure-activity relationship models: improving structure-activity relationship models by incorporating activity information from related targets.J Chem Inf Model2009
20028521svmPRAT: SVM-based protein residue annotation toolkit.BMC Bioinformatics2009
19764745Target fishing for chemical compounds using target-ligand activity data and ranking based methods.J Chem Inf Model2009
19786483LIBRUS: combined machine learning and homology information for sequence-based ligand-binding residue prediction.Bioinformatics2009
19566958Improved estimation of structure predictor quality.BMC Struct Biol2009
19072298Common pharmacophore identification using frequent clique detection algorithm.J Chem Inf Model2009
18402435Indirect similarity based methods for effective scaffold-hopping in chemical compounds.J Chem Inf Model2008
19642282Improving homology models for protein-ligand binding sites.Comput Syst Bioinformatics Conf2008
18977046Mining bioprocess data: opportunities and challenges.Trends Biotechnol2008
18243120Conserved GU-rich elements mediate mRNA decay by binding to CUG-binding protein 1.Mol Cell2008
18300251fRMSDPred: predicting local RMSD between structural fragments using sequence information.Proteins2008
18229709An analysis of information content present in protein-DNA interactions.Pac Symp Biocomput2008
17237087Incremental window-based protein sequence alignment algorithms.Bioinformatics2007
17959654Transcriptome dynamics-based operon prediction and verification in Streptomyces coelicolor.Nucleic Acids Res2007
17951843Method for effective virtual screening and scaffold-hopping in chemical compounds.Comput Syst Bioinformatics Conf2007
17951834fRMSDPred: predicting local RMSD between structural fragments using sequence information.Comput Syst Bioinformatics Conf2007
17589965Effective optimization algorithms for fragment-assembly based protein structure prediction.J Bioinform Comput Biol2007
17428327Data Mining in Bioinformatics (BIOKDD).Algorithms Mol Biol2007
16580853QCRNA 1.0: a database of quantum calculations for RNA catalysis.J Mol Graph Model2006
17369622Effective optimization algorithms for fragment-assembly based protein structure prediction.Comput Syst Bioinformatics Conf2006
17042943Building multiclass classifiers for remote homology detection and fold recognition.BMC Bioinformatics2006
16763996YASSPP: better kernels and coding schemes lead to improvements in protein secondary structure prediction.Proteins2006
16508641Genomic view of systemic autoimmunity in MRLlpr mice.Genes Immun2006
16118415Data clustering in life sciences.Mol Biotechnol2005
16779335Feature mining for prediction of degree of liver fibrosis.AMIA Annu Symp Proc2005
16188929Profile-based direct kernels for remote homology detection and fold recognition.Bioinformatics2005
14998530Macromolecule mass spectrometry: citation mining of user documents.J Am Soc Mass Spectrom2004
15175644Expression levels for many genes in human peripheral blood cells are highly sensitive to ex vivo incubation.Genes Immun2004
15491862A Boolean algorithm for reconstructing the structure of regulatory networks.Metab Eng2004
12710674Clustering in life sciences.Methods Mol Biol2003
12604793Interferon-inducible gene expression signature in peripheral blood cells of patients with severe lupus.Proc Natl Acad Sci U S A2003
14555780wCLUTO: a Web-enabled clustering toolkit.Plant Physiol2003
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Collaborators

Timothy W Behrens
Genentech Inc.
Co-authored papers 3
Patrick M Gaffney
Co-authored papers 2
Peter K Gregersen
Co-authored papers 2
Franak Batliwalla
Co-authored papers 2
Emily C Baechler
Co-authored papers 2
Ward Ortmann
University of Minnesota School of Medicine
Co-authored papers 2
Evaristus Nwulia
Howard University Hospital
Co-authored papers 1
Brendan J Keating
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 1
John P Rice
Washington University School of Medicine
Co-authored papers 1
Thomas W M??hleisen
Institute of Neuroscience and Medicine (INM-1), Research Center Juelich
Co-authored papers 1
Markus M N??then
Institute of Human Genetics, University Hospital Bonn
Co-authored papers 1
Howard J Edenberg
Indiana University School of Medicine
Co-authored papers 1
Pamela B Mahon
Brigham & Women's Hospital, Harvard Medical School
Co-authored papers 1
Sebastian Z??llner
University of Michigan ann arbor
Co-authored papers 1
Manuel Mattheisen
Dalhousie University
Co-authored papers 1
Paul R Bohjanen
Co-authored papers 1
Ann B Begovich
Cetus Corporation
Co-authored papers 1
Josef Frank
Central Institute of Mental Health, Heidelberg University
Co-authored papers 1
Eriko Takano
Manchester Institute of Biotechnology, University of Manchester
Co-authored papers 1
John R Kelsoe
University of California
Co-authored papers 1
Nicholas J Schork
University of California San Diego
Co-authored papers 1
Peng Zhang
University of Michigan ann arbor
Co-authored papers 1
Francis J McMahon
National Institute of Mental Health
Co-authored papers 1
Paul D Shilling
University of California
Co-authored papers 1
Kathy L Moser
Co-authored papers 1
Getiria Onsongo
Macalester College
Co-authored papers 1
Tatyana Shekhtman
University of California
Co-authored papers 1
Cinnamon Bloss
University of California
Co-authored papers 1
Sarah Murray
University of California
Co-authored papers 1
Erin N Smith
Department of Pediatrics and Rady's Children's Hospital, University of California
Co-authored papers 1
Release 1.2