Author details

Full Name

Abhishek K Jha

Affiliation

Elucidata Corporation

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
35584006	Pyruvate Kinase M1 Suppresses Development and Progression of Prostate Adenocarcinoma.	Cancer Res	2022
34644150	Metabolic regulation by PD-1 signaling promotes long-lived quiescent CD8 T cell memory in mice.	Sci Transl Med	2021
32562798	Targeting pheochromocytoma/paraganglioma with polyamine inhibitors.	Metabolism	2020
32720079	Correction to: EGFR Targeted Paclitaxel and Piperine Co-loaded Liposomes for the Treatment of Triple Negative Breast Cancer.	AAPS PharmSciTech	2020
32684002	Targeted drug nanocrystals for pulmonary delivery: a potential strategy for lung cancer therapy.	Expert Opin Drug Deliv	2020
31119671	El-MAVEN: A Fast, Robust, and User-Friendly Mass Spectrometry Data Processing Engine for Metabolomics.	Methods Mol Biol	2019
26853747	Environment Impacts the Metabolic Dependencies of Ras-Driven Non-Small Cell Lung Cancer.	Cell Metab	2016
27098040	GAM: a web-service for integrated transcriptional and metabolic network analysis.	Nucleic Acids Res	2016
25786174	Network integration of parallel metabolic and transcriptional data reveals metabolic modules that regulate macrophage polarization.	Immunity	2015
25502225	Mesenchymal phenotype predisposes lung cancer cells to impaired proliferation and redox stress in response to glutaminase inhibition.	PLoS One	2014
23911236	Hexokinase 2 is required for tumor initiation and maintenance and its systemic deletion is therapeutic in mouse models of cancer.	Cancer Cell	2013
22922757	Pyruvate kinase M2 activators promote tetramer formation and suppress tumorigenesis.	Nat Chem Biol	2012
22928488	Context and force field dependence of the loss of protein backbone entropy upon folding using realistic denatured and native state ensembles.	J Am Chem Soc	2012
21760589	Functional genomics reveal that the serine synthesis pathway is essential in breast cancer.	Nature	2011
22049910	Full-length human glutaminase in complex with an allosteric inhibitor.	Biochemistry	2011
21843481	Automated real-space refinement of protein structures using a realistic backbone move set.	Biophys J	2011
19237560	Mimicking the folding pathway to improve homology-free protein structure prediction.	Proc Natl Acad Sci U S A	2009
18348560	Benchmarking implicit solvent folding simulations of the amyloid beta(10-35) fragment.	J Phys Chem B	2008
18946038	How the thymus designs antigen-specific and self-tolerant T cell receptor sequences.	Proc Natl Acad Sci U S A	2008
18205504	Solvation effect on conformations of 1,2:dimethoxyethane: charge-dependent nonlinear response in implicit solvent models.	J Chem Phys	2008
17223689	Polypeptide motions are dominated by peptide group oscillations resulting from dihedral angle correlations between nearest neighbors.	Biochemistry	2007
17893359	Reduced C(beta) statistical potentials can outperform all-atom potentials in decoy identification.	Protein Sci	2007
17549789	Structural, dynamic properties of key residues in Abeta amyloidogenesis: implications of an important role of nanosecond timescale dynamics.	Chembiochem	2007
16982067	Minimalist representations and the importance of nearest neighbor effects in protein folding simulations.	J Mol Biol	2006
16876194	Small proteins fold through transition states with native-like topologies.	J Mol Biol	2006
16008354	Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library.	Biochemistry	2005
16131545	Statistical coil model of the unfolded state: resolving the reconciliation problem.	Proc Natl Acad Sci U S A	2005

1 - 27 of 27

Kerri A Ball

Skidmore College

Career Start Year 2008

Number of shared co-authors 0

Massimiliano Bonomi

Institut Pasteur, Universite Paris Cite, CNRS UMR 8

Career Start Year 2007

Number of shared co-authors 1

James S Fraser

University of California san francisco

Career Start Year 2006

Number of shared co-authors 1

Oliver F Lange

Center for Integrated Protein Science, Technische Universitat Munchen

Career Start Year 2004

Number of shared co-authors 1

Timothy R Lezon

University of Pittsburgh

Career Start Year 2004

Number of shared co-authors 1

Riccardo Pellarin

CNRS UMR 5086 and Universite Claude Bernard Lyon 1

Career Start Year 2003

Number of shared co-authors 1

Henry van den Bedem

University of California San Francisco

Career Start Year 2002

Number of shared co-authors 0

Rommie E Amaro

University of California

Career Start Year 2001

Number of shared co-authors 0

Matteo Dal Peraro

Institute of Bioengineering

Career Start Year 2001

Number of shared co-authors 1

David E Shaw

Columbia University

Career Start Year 2000

Number of shared co-authors 1

Mark J S Kelly

Department of Pharmaceutical Chemistry, University of California San Francisco

Career Start Year 2000

Number of shared co-authors 1

Lewyn Li

Dana-Farber Cancer Institute, Harvard Medical School

Career Start Year 2000

Number of shared co-authors 0

Matthew P Jacobson

Department of Pharmaceutical Chemistry, University of California san francisco

Career Start Year 1999

Number of shared co-authors 2

Michael Feig

Michigan State University

Career Start Year 1998

Number of shared co-authors 1

Nikolay V Dokholyan

Pennsylvania State University College of Medicine

Career Start Year 1998

Number of shared co-authors 2

Michele Vendruscolo

University of Cambridge

Career Start Year 1996

Number of shared co-authors 1

Alexei A Podtelezhnikov

Genetics and Pharmacogenomics, Merck & Co., Inc.

Career Start Year 1994

Number of shared co-authors 0

Ivet Bahar

Laufer Center for Physical and Quantitative Biology, Stony Brook University

Career Start Year 1994

Number of shared co-authors 2

Giorgio Colombo

Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico

Career Start Year 1993

Number of shared co-authors 0

Huan-Xiang Zhou

University of Illinois Chicago

Career Start Year 1993

Number of shared co-authors 1

Rebecca C Wade

Center for Molecular Biology (ZMBH), Heidelberg University

Career Start Year 1989

Number of shared co-authors 1

David Baker

University of Washington

Career Start Year 1988

Number of shared co-authors 3

Ariel Fern??ndez

University of Florida

Career Start Year 1984

Number of shared co-authors 5

Ruth Nussinov

Sackler School of Medicine, Tel Aviv University

Career Start Year 1980

Number of shared co-authors 1

Eugene I Shakhnovich

Harvard University

Career Start Year 1980

Number of shared co-authors 1

David A Case

Rutgers University

Career Start Year 1977

Number of shared co-authors 1

Charles L Brooks

University of Michigan ann arbor

Career Start Year 1974

Number of shared co-authors 1

Michael Levitt

Stanford University

Career Start Year 1969

Number of shared co-authors 2

Martin Karplus

Harvard University

Career Start Year 1959

Number of shared co-authors 1

Jens Meiler

Vanderbilt University

Career Start Year 1954

Number of shared co-authors 1

row(s) 1 - 30 of 30

Karl F Freed

University of Chicago

Co-authored papers 11

Tobin R Sosnick

Institute for Biophysical Dynamics, The University of Chicago

Co-authored papers 9

Andres Colubri

University of Massachusetts Medical School

Co-authored papers 5

Maxim N Artyomov

Co-authored papers 2

Craig J Thomas

Center for Cancer Research, National Cancer Institute

Co-authored papers 2

Lewis C Cantley

Co-authored papers 2

David M Sabatini

Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology

Co-authored papers 1

Min-Yi Shen

National Chung Hsing University

Co-authored papers 1

Andrej Sali (CM4AI)

University of California San Francisco

Co-authored papers 1

Hee-Won Park

Kangwon National University College of Medicine

Co-authored papers 1

Nicolas Stransky

Co-authored papers 1

Karel Pacak

Eunice Kennedy Shriver National Institute of Child Health and Human Development

Co-authored papers 1

Levi A Garraway

Broad Institute of Harvard and MIT

Co-authored papers 1

Tyler Jacks

Co-authored papers 1

Markku Laakso

Co-authored papers 1

Clary B Clish

Broad Institute of MIT and Harvard

Co-authored papers 1

Bingbing Yuan

Whitehead Institute for Biomedical Research

Co-authored papers 1

Gregory Stephanopoulos

Massachusetts Institute of Technology

Co-authored papers 1

Matthew B Boxer

Co-authored papers 1

Noel Southall

National Center for Advancing Translational Sciences, National Institutes of Health

Co-authored papers 1

Martin J Walsh

Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai

Co-authored papers 1

Christopher P Austin

St. George's University Medical School

Co-authored papers 1

Martin Prlic

Fred Hutchinson Cancer Research Center

Co-authored papers 1

Massimo Loda

Weill Medical College of Cornell University

Co-authored papers 1

Robert B Robey

Geisel School of Medicine at Dartmouth and US Department of Veterans Affairs

Co-authored papers 1

R Stephen Berry

University of Chicago

Co-authored papers 1

Fan Jiang

Co-authored papers 1

Soumya Luthra

Co-authored papers 1

Min Shen

National Center for Advancing Translational Sciences, National Institutes of Health

Co-authored papers 1

Heather R Christofk

Jonsson Comprehensive Cancer Center, University of California los angeles

Co-authored papers 1

1 - 30

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