Author details

Full Name

Karthik Shekhar

Affiliation

ORCID

Career Start Year

2011

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36807640	Temporal single-cell atlas of non-neuronal retinal cells reveals dynamic, coordinated multicellular responses to central nervous system injury.	Nat Immunol	2023
35870562	Vision-Dependent and -Independent Molecular Maturation of Mouse Retinal Ganglion Cells.	Neuroscience	2023
37771914	Ancient origin of the rod bipolar cell pathway in the vertebrate retina.	bioRxiv	2023
36881293	Defining Selective Neuronal Resilience and Identifying Targets of Neuroprotection and Axon Regeneration Using Single-Cell RNA Sequencing: Computational Approaches.		2023
37066415	Evolution of neuronal cell classes and types in the vertebrate retina.		2023
35191836	Diversification of multipotential postmitotic mouse retinal ganglion cell precursors into discrete types.	eLife	2022
35830791	Unified classification of mouse retinal ganglion cells using function, morphology, and gene expression.	Cell Rep	2022
35063073	Vision-dependent specification of cell types and function in the developing cortex.	Cell	2022
35313950	Solving neurodegeneration: common mechanisms and strategies for new treatments.	Mol Neurodegener	2022
34529935	Dietary suppression of MHC class II expression in intestinal epithelial cells enhances intestinal tumorigenesis.	Cell Stem Cell	2021
34228938	Generating and Using Transcriptomically Based Retinal Cell Atlases.	Annual Review of Vision Science	2021
33357413	Molecular classification of zebrafish retinal ganglion cells links genes to cell types to behavior.	Neuron	2021
32555229	Cell Atlas of The Human Fovea and Peripheral Retina.	Sci Rep	2020
32341164	Cell atlas of aqueous humor outflow pathways in eyes of humans and four model species provides insight into glaucoma pathogenesis.	Proc Natl Acad Sci U S A	2020
30712875	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina.	Cell	2019
31784286	Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes.	Neuron	2019
30758819	Identification of Cell Types from Single-Cell Transcriptomic Data.	Methods in Molecular Biology	2019
29576475	Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq.	Curr Biol	2018
30392957	T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation.	Cell	2018
30385464	Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region.	Science	2018
29700225	Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis.	Science	2018
27787803	Single-Cell RNA Sequencing of Human T Cells.	Methods in Molecular Biology	2017
28428369	Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors.	Science	2017
28846088	Massively parallel single-nucleus RNA-seq with DroNc-seq.	Nat Methods	2017
28333933	Geometry-dependent functional changes in iPSC-derived cardiomyocytes probed by functional imaging and RNA sequencing.	PLoS One	2017
28696306	Continuous immunotypes describe human immune variation and predict diverse responses.	Proceedings of the National Academy of Sciences of the United States of America	2017
29144463	A single-cell survey of the small intestinal epithelium.	Nature	2017
27565351	Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics.	Cell	2016
27348411	Hydrophobic CDR3 residues promote the development of self-reactive T cells.	Nature Immunology	2016
26000488	Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.	Cell	2015
26362266	Magnitude and Kinetics of CD8+ T Cell Activation during Hyperacute HIV Infection Impact Viral Set Point.	Immunity	2015
24760894	Statistical linkage analysis of substitutions in patient-derived sequences of genotype 1a hepatitis C virus nonstructural protein 3 exposes targets for immunogen design.	Journal of Virology	2014
24344260	Automatic Classification of Cellular Expression by Nonlinear Stochastic Embedding (ACCENSE).	Proceedings of the National Academy of Sciences of the United States of America	2014
24172905	Therapeutic efficacy of potent neutralizing HIV-1-specific monoclonal antibodies in SHIV-infected rhesus monkeys.	Nature	2013
24483484	Spin models inferred from patient-derived viral sequence data faithfully describe HIV fitness landscapes.	Phys Rev E Stat Nonlin Soft Matter Phys	2013
21690407	Coordinate linkage of HIV evolution reveals regions of immunological vulnerability.	Proc Natl Acad Sci U S A	2011