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Author Details

John Chilton
The Pennsylvania State University, University Park
2010
16
12
PMIDPaper TitleJournal TitlePublished Year
36828587The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond.Genome Res2023
33104194GalaxyCloudRunner: enhancing scalable computing for Galaxy.Bioinformatics2021
31959996Galaxy External Display Applications: closing a dataflow interoperability loop.Nat Methods2020
31506093Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges.Genome Biol2019
29790989The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.Nucleic Acids Res2018
29953864Community-Driven Data Analysis Training for Biology.Cell Syst2018
29953862Practical Computational Reproducibility in the Life Sciences.Cell Syst2018
28542180Jupyter and Galaxy: Easing entry barriers into complex data analyses for biomedical researchers.PLoS Comput Biol2017
27137889The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update.Nucleic Acids Res2016
25658277Multi-omic data analysis using Galaxy.Nat Biotechnol2015
26336600NCBI BLAST+ integrated into Galaxy.Gigascience2015
24885806Implementation of Cloud based next generation sequencing data analysis in a clinical laboratory.BMC Res Notes2014
25472764Community-driven development for computational biology at Sprints, Hackathons and Codefests.BMC Bioinformatics2014
22577012Using iRT, a normalized retention time for more targeted measurement of peptides.Proteomics2012
22623410Workflow for analysis of high mass accuracy salivary data set using MaxQuant and ProteinPilot search algorithm.Proteomics2012
20821806LTQ-iQuant: A freely available software pipeline for automated and accurate protein quantification of isobaric tagged peptide data from LTQ instruments.Proteomics2010
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Collaborators

Anton Nekrutenko
The Pennsylvania State University, University Park
Co-authored papers 6
James Taylor
Johns Hopkins University
Co-authored papers 5
Eric S Rasche
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Co-authored papers 4
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Co-authored papers 4
Enis Afgan
Johns Hopkins University
Co-authored papers 4
Pratik D Jagtap
University of Minnesota
Co-authored papers 3
Daniel Blankenberg
Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic
Co-authored papers 3
Dave Clements
Johns Hopkins University
Co-authored papers 3
Peter J A Cock
James Hutton Institute
Co-authored papers 3
Jeremy Goecks
Oregon Health & Science University
Co-authored papers 3
Timothy J Griffin
University of Minnesota
Co-authored papers 3
Getiria Onsongo
Macalester College
Co-authored papers 2
Jennifer Hillman-Jackson
Co-authored papers 2
Kenneth B Beckman
University of Minnesota Genomics Center (UMNGC)
Co-authored papers 1
Allison L Creason
Oregon Health and Science University
Co-authored papers 1
Alex Buchanan
Oregon Health and Science University
Co-authored papers 1
Richard Holland
Eagle Genomics Ltd
Co-authored papers 1
Youri Hoogstrate
Erasmus MC Cancer Institute
Co-authored papers 1
Lukas Reiter
Co-authored papers 1
Roman Valls Guimera
University of Melbourne
Co-authored papers 1
Peter Horvatovich
Groningen Research Institute of Pharmacy, University of Groningen
Co-authored papers 1
Fidel Ram??rez
Max Planck Institute of Immunobiology and Epigenetics
Co-authored papers 1
James Eddy
Co-authored papers 1
Mallory A Freeberg
EMBL's European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 1
Sean L Seymour
Co-authored papers 1
Toshiaki Katayama
Database Center for Life Science
Co-authored papers 1
Michael J MacCoss
University of Washington
Co-authored papers 1
Jacqueline Y Quinn
Autodesk Inc.
Co-authored papers 1
Andreas Tille
Robert Koch-Institute
Co-authored papers 1
Nomi L Harris
Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University
Co-authored papers 1
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