Author details

Full Name

Mihaela Zavolan

Affiliation

ORCID

Career Start Year

1994

Papers

155

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37192817	Corrigendum: Shortening of 3' UTRs in most cell types composing tumor tissues implicates alternative polyadenylation in protein metabolism.		2023
37816550	Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data.	RNA	2023
37639610	Impaired age-associated mitochondrial translation is mitigated by exercise and PGC-1Î±.		2023
37705828	Identification of experimentally-supported poly(A) sites in single-cell RNA-seq data with SCINPAS.		2023
37069586	Improved analysis of (e)CLIP data with RCRUNCH yields a compendium of RNA-binding protein binding sites and motifs.	Genome Biol	2023
35194110	Untargeted sequencing of circulating microRNAs in a healthy and diseased older population.	Scientific Reports	2022
36302954	Dual roles of mTORC1-dependent activation of the ubiquitin-proteasome system in muscle proteostasis.	Communications Biology	2022
35583599	Cholesterol Deprivation Drives DHEA Biosynthesis in Human Adrenals.	Endocrinology	2022
35440545	Distinct and additive effects of calorie restriction and rapamycin in aging skeletal muscle.	Nature Communications	2022
36001069	A novel approach to single-cell analysis reveals intrinsic differences in immune marker expression in unstimulated BALB/c and C57BL/6 macrophages.	FEBS Letters	2022
35477974	Author Correction: Distinct and additive effects of calorie restriction and rapamycin in aging skeletal muscle.	Nature Communications	2022
35234914	CFIm-mediated alternative polyadenylation remodels cellular signaling and miRNA biogenesis.	Nucleic Acids Research	2022
35083472	Transcription factor motif activity as a biomarker of muscle aging.		2021
33860124	Transcriptional Enhancer Factor Domain Family member 4 Exerts an Oncogenic Role in Hepatocellular Carcinoma by Hippo-Independent Regulation of Heat Shock Protein 70 Family Members.	Hepatol Commun	2021
33580198	Molecular and phenotypic analysis of rodent models reveals conserved and species-specific modulators of human sarcopenia.	Communications Biology	2021
33462199	Structure of SRSF1 RRM1 bound to RNA reveals an unexpected bimodal mode of interaction and explains its involvement in SMN1 exon7 splicing.	Nature Communications	2021
33927416	Bayesian inference of gene expression states from single-cell RNA-seq data.	Nat Biotechnol	2021
34521731	Shortening of 3' UTRs in most cell types composing tumor tissues implicates alternative polyadenylation in protein metabolism.	RNA	2021
34389041	Nanopore sequencing reveals endogenous NMD-targeted isoforms in human cells.		2021
32908143	The neuromuscular junction is a focal point of mTORC1 signaling in sarcopenia.	Nature Communications	2020
32017898	The Alazami Syndrome-Associated Protein LARP7 Guides U6 Small Nuclear RNA Modification and Contributes to Splicing Robustness.	Molecular Cell	2020
31617559	PolyASite 2.0: a consolidated atlas of polyadenylation sites from 3' end sequencing.	Nucleic Acids Research	2020
32102681	A rare codon-based translational program of cell proliferation.		2020
31919282	Loss of TSC complex enhances gluconeogenesis via upregulation of locus miRNAs.	Proceedings of the National Academy of Sciences of the United States of America	2020
33375322	Gene Expression Signatures of a Preclinical Mouse Model during Colorectal Cancer Progression under Low-Dose Metronomic Chemotherapy.	Cancers	2020
33311468	Aberrant interaction of FUS with the U1 snRNA provides a molecular mechanism of FUS induced amyotrophic lateral sclerosis.	Nature Communications	2020
32812257	Prevention of dsRNA-induced interferon signaling by AGO1x is linked to breast cancer cell proliferation.	EMBO J	2020
30728462	MINA-1 and WAGO-4 are part of regulatory network coordinating germ cell death and RNAi in C. elegans.	Cell Death Differ	2019
31292258	Protein synthesis rates and ribosome occupancies reveal determinants of translation elongation rates.	Proceedings of the National Academy of Sciences of the United States of America	2019
30704403	Conserved regulation of RNA processing in somatic cell reprogramming.	BMC Genomics	2019
31267064	Alternative cleavage and polyadenylation in health and disease.	Nature Reviews Genetics	2019
29275148	RNA splicing and its connection with other regulatory layers in somatic cell reprogramming.	Current Opinion in Cell Biology	2018
30202060	Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms.	Nature Methods	2018
30150282	Single-cell mRNA profiling reveals the hierarchical response of miRNA targets to miRNA induction.	Mol Syst Biol	2018
30198187	Mirroring the multifaceted role of RNA and its partners in gene expression.	FEBS Letters	2018
30232334	Roquin targets mRNAs in a 3'-UTR-specific manner by different modes of regulation.	Nat Commun	2018
29592812	Discovery of physiological and cancer-related regulators of 3' UTR processing with KAPAC.	Genome Biol	2018
28031372	High-throughput identification of C/D box snoRNA targets with CLIP and RiboMeth-seq.	Nucleic Acids Research	2017
28753602	Automated incorporation of pairwise dependency in transcription factor binding site prediction using dinucleotide weight tensors.	PLoS Comput Biol	2017
28412966	TFAP2A is a component of the ZEB1/2 network that regulates TGFB1-induced epithelial to mesenchymal transition.	Biology Direct	2017
28878244	The Gcn4 transcription factor reduces protein synthesis capacity and extends yeast lifespan.	Nature Communications	2017
29053696	3' End Sequencing Library Preparation with A-seq2.	Journal of Visualized Experiments	2017
29187228	RNAs: dynamic and mutable.		2017
29246441	Roquin Suppresses the PI3K-mTOR Signaling Pathway to Inhibit T Helper Cell Differentiation and Conversion of Treg to Tfr Cells.	Immunity	2017
28215525	Explicit Modeling of siRNA-Dependent On- and Off-Target Repression Improves the Interpretation of Screening Results.	Cell Systems	2017
27884178	Patterns of ribosomal protein expression specify normal and malignant human cells.		2016
27243472	Redesigning CLIP for efficiency, accuracy and speed.	Nature Methods	2016
27382025	A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation.	Genome Research	2016
27010430	Roquin recognizes a non-canonical hexaloop structure in the 3'-UTR of Ox40.	Nat Commun	2016
27372217	Corrigendum to "Quantifying the strength of miRNA-target interactions" [Methods (2015) 90-99].	Methods	2016