Author details

Full Name

Matan Hofree

Affiliation

Broad Institute of Harvard and MIT

ORCID

Career Start Year

2010

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36705566	Efficacy and safety of metabolic interventions for the treatment of severe COVID-19: in vitro, observational, and non-randomized open-label interventional study.	Elife	2023
36705566	Efficacy and safety of metabolic interventions for the treatment of severe COVID-19: in vitro, observational, and non-randomized open-label interventional study.	Elife	2023
37066412	Spatial analysis of human lung cancer reveals organized immune hubs enriched for stem-like CD8 T cells and associated with immunotherapy response.	bioRxiv	2023
36624340	Multimodal single-cell and whole-genome sequencing of small, frozen clinical specimens.	Nat Genet	2023
37066412	Spatial analysis of human lung cancer reveals organized immune hubs enriched for stem-like CD8 T cells and associated with immunotherapy response.	bioRxiv	2023
36624340	Multimodal single-cell and whole-genome sequencing of small, frozen clinical specimens.	Nat Genet	2023
35906236	Mouse fetal growth restriction through parental and fetal immune gene variation and intercellular communications cascade.	Nat Commun	2022
35906236	Mouse fetal growth restriction through parental and fetal immune gene variation and intercellular communications cascade.	Nat Commun	2022
35411083	Genome-wide CRISPR screen identifies PRC2 and KMT2D-COMPASS as regulators of distinct EMT trajectories that contribute differentially to metastasis.	Nat Cell Biol	2022
35411083	Genome-wide CRISPR screen identifies PRC2 and KMT2D-COMPASS as regulators of distinct EMT trajectories that contribute differentially to metastasis.	Nat Cell Biol	2022
34450029	Spatially organized multicellular immune hubs in human colorectal cancer.	Cell	2021
34910928	Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps.	Cell	2021
34450029	Spatially organized multicellular immune hubs in human colorectal cancer.	Cell	2021
34638407	Implications of Intratumor Heterogeneity on Consensus Molecular Subtype (CMS) in Colorectal Cancer.	Cancers (Basel)	2021
34910928	Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps.	Cell	2021
34638407	Implications of Intratumor Heterogeneity on Consensus Molecular Subtype (CMS) in Colorectal Cancer.	Cancers (Basel)	2021
32355025	Regenerative potential of prostate luminal cells revealed by single-cell analysis.	Science	2020
32355025	Regenerative potential of prostate luminal cells revealed by single-cell analysis.	Science	2020
32707077	Emergence of a High-Plasticity Cell State during Lung Cancer Evolution.	Cancer Cell	2020
32755564	A Distinct Transcriptional Program in Human CAR T Cells Bearing the 4-1BB Signaling Domain Revealed by scRNA-Seq.	Mol Ther	2020
32707077	Emergence of a High-Plasticity Cell State during Lung Cancer Evolution.	Cancer Cell	2020
32755564	A Distinct Transcriptional Program in Human CAR T Cells Bearing the 4-1BB Signaling Domain Revealed by scRNA-Seq.	Mol Ther	2020
31130381	A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia.	Cell	2019
31130381	A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia.	Cell	2019
31217164	Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair-Deficient Colorectal Cancer.	Cancer Immunol Res	2019
31217164	Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair-Deficient Colorectal Cancer.	Cancer Immunol Res	2019
30185635	Rapid CLIP dissociation from MHC II promotes an unusual antigen presentation pathway in autoimmunity.	J Exp Med	2018
30185635	Rapid CLIP dissociation from MHC II promotes an unusual antigen presentation pathway in autoimmunity.	J Exp Med	2018
27869830	Inactivation of Capicua drives cancer metastasis.	Nat Genet	2017
28902842	The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation.	Nature	2017
28846088	Massively parallel single-nucleus RNA-seq with DroNc-seq.	Nat Methods	2017
28886383	Anatomically and Functionally Distinct Lung Mesenchymal Populations Marked by Lgr5 and Lgr6.	Cell	2017
28515055	Exome Sequencing of African-American Prostate Cancer Reveals Loss-of-Function <i>ERF</i> Mutations.	Cancer Discov	2017
29143821	Erratum: The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation.	Nature	2017
28188128	Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer.	Cancer Discov	2017
27869830	Inactivation of Capicua drives cancer metastasis.	Nat Genet	2017
28188128	Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer.	Cancer Discov	2017
29143821	Erratum: The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation.	Nature	2017
28515055	Exome Sequencing of African-American Prostate Cancer Reveals Loss-of-Function <i>ERF</i> Mutations.	Cancer Discov	2017
28886383	Anatomically and Functionally Distinct Lung Mesenchymal Populations Marked by Lgr5 and Lgr6.	Cell	2017
28902842	The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation.	Nature	2017
28846088	Massively parallel single-nucleus RNA-seq with DroNc-seq.	Nat Methods	2017
27112350	Network-driven plasma proteomics expose molecular changes in the Alzheimer's brain.	Mol Neurodegener	2016
27112350	Network-driven plasma proteomics expose molecular changes in the Alzheimer's brain.	Mol Neurodegener	2016
27417679	Challenges in identifying cancer genes by analysis of exome sequencing data.	Nat Commun	2016
27216421	Erratum to: Network-driven plasma proteomics expose molecular changes in the Alzheimer's brain.	Mol Neurodegener	2016
27417679	Challenges in identifying cancer genes by analysis of exome sequencing data.	Nat Commun	2016
27216421	Erratum to: Network-driven plasma proteomics expose molecular changes in the Alzheimer's brain.	Mol Neurodegener	2016
25592571	Identifying mutation specific cancer pathways using a structurally resolved protein interaction network.	Pac Symp Biocomput	2015
25592571	Identifying mutation specific cancer pathways using a structurally resolved protein interaction network.	Pac Symp Biocomput	2015

1 - 50 of 70

Rohan Bareja

Case Western Reserve University

Career Start Year 2017

Number of shared co-authors 9

Simona Cristea

Dana-Farber Cancer Institute

Career Start Year 2016

Number of shared co-authors 0

Arshi Arora

Memorial Sloan Kettering Cancer Center

Career Start Year 2011

Number of shared co-authors 10

Elana J Fertig

Johns Hopkins University School of Medicine

Career Start Year 2010

Number of shared co-authors 8

David A Quigley

University of California-San Francisco

Career Start Year 2008

Number of shared co-authors 1

Giovanni Ciriello

University of Lausanne (UNIL)

Career Start Year 2008

Number of shared co-authors 7

Siyuan Zheng

Greehey Children's Cancer Research Institute

Career Start Year 2007

Number of shared co-authors 4

Matti Nykter

Prostate Cancer Research Center, Tampere University and Tays Cancer Center

Career Start Year 2006

Number of shared co-authors 2

James C Costello

University of Colorado Anschutz Medical Campus

Career Start Year 2006

Number of shared co-authors 6

Nicola Waddell

QIMR Berghofer Medical Research Institute

Career Start Year 2006

Number of shared co-authors 1

Christopher A Bristow

The University of Texas MD Anderson Cancer Center

Career Start Year 2005

Number of shared co-authors 8

Jamie K Teer

H. Lee Moffitt Cancer Center and Research Institute

Career Start Year 2005

Number of shared co-authors 2

Han Liang

MD Anderson Cancer Center

Career Start Year 2005

Number of shared co-authors 9

Matthew D Wilkerson

Uniformed Services University of the Health Sciences

Career Start Year 2004

Number of shared co-authors 8

Nikolaus Schultz

Memorial Sloan Kettering Cancer Center

Career Start Year 2003

Number of shared co-authors 26

Peter Van Loo

The Francis Crick Institute

Career Start Year 2003

Number of shared co-authors 3

Amy G Robertson

Present address: Dxige Research Inc.

Career Start Year 2003

Number of shared co-authors 5

Jianhua Zhang

University of Texas MD Anderson Cancer Center

Career Start Year 2003

Number of shared co-authors 7

Obi L Griffith

Washington University

Career Start Year 2003

Number of shared co-authors 5

Olivier Harismendy

University of California

Career Start Year 2003

Number of shared co-authors 18

Olivier Elemento

Meyer Cancer Center

Career Start Year 2002

Number of shared co-authors 19

Vladimir Makarov

Center for Immunotherapy and Precision-Immuno-Oncology, Cleveland Clinic

Career Start Year 2001

Number of shared co-authors 7

Joshua M Stuart

University of California at Santa Cruz

Career Start Year 2000

Number of shared co-authors 12

Luciano G Martelotto

Monash University

Career Start Year 2000

Number of shared co-authors 0

Gad Getz

Broad Institute of the Massachusetts Institute of Technology and Harvard

Career Start Year 2000

Number of shared co-authors 29

Andrew J Gentles

Stanford Center for Biomedical Informatics Research, Stanford University

Career Start Year 1999

Number of shared co-authors 0

Li Ding

McDonnell Genome Institute, Washington University School of Medicine

Career Start Year 1997

Number of shared co-authors 12

Aaron M Newman

Stanford University

Career Start Year 1994

Number of shared co-authors 1

Andrea Califano

Columbia University

Career Start Year 1993

Number of shared co-authors 17

Matthew Meyerson

Broad Institute

Career Start Year 1983

Number of shared co-authors 24

row(s) 1 - 30 of 30

Aviv Regev

Broad Institute of MIT and Harvard

Co-authored papers 14

Trey Ideker (CM4AI)

University of California San Diego

Co-authored papers 13

Orit Rozenblatt-Rosen

Co-authored papers 10

Hannah Carter

University of California San Diego

Co-authored papers 6

Orr Ashenberg

Co-authored papers 5

Danielle Dionne

Co-authored papers 5

Nir Hacohen

Broad Institute of MIT and Harvard

Co-authored papers 3

Ayshwarya Subramanian

Broad Institute of MIT and Harvard

Co-authored papers 3

Michael S Cuoco

Co-authored papers 3

John Paul Shen

The University of Texas MD Anderson Cancer Center

Co-authored papers 3

Stacey Gabriel

Broad Institute of MIT and Harvard

Co-authored papers 3

Andrew M Gross

Illumina Inc.

Co-authored papers 3

Joseph G Gleeson

University of California

Co-authored papers 2

Bradley F Boeve

Mayo Clinic Rochester

Co-authored papers 2

Elizabeth Head

University of California Irvine

Co-authored papers 2

Jason F Kreisberg

University of California San Diego

Co-authored papers 2

Neill R Graff-Radford

Mayo Clinic Florida

Co-authored papers 2

Brian J Haas

Broad Institute of MIT and Harvard

Co-authored papers 2

Lindsay A Farrer

Boston University Chobanian & Avedisian School of Medicine

Co-authored papers 2

Ronald C Beavis

University of Manitoba

Co-authored papers 2

Timothy L Tickle

Broad Institute

Co-authored papers 2

David S Knopman

Mayo Clinic Rochester

Co-authored papers 2

Hogune Im

Genome Opinion Inc.

Co-authored papers 2

Tyler Jacks

Co-authored papers 2

Seul-Ki Jeong

Seul-Ki Jeong Neurology Clinic

Co-authored papers 2

Andrey Loboda

Merck & Co., Inc.

Co-authored papers 2

Maha S Zaki

Human Genetics and Genome Research Institute, National Research Centre

Co-authored papers 2

Jennifer L Silhavy

University of California

Co-authored papers 2

Young-Ki Paik

College of Life Sciences and Biotechnology, Yonsei University

Co-authored papers 2

William S Hancock

Northeastern University

Co-authored papers 2

1 - 30

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