Author details

Full Name

Ivan Anishchenko

Affiliation

University of Washington

ORCID

Career Start Year

2009

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37996753	Accurate prediction of protein-nucleic acid complexes using RoseTTAFoldNA.	Nat Methods	2024
37996753	Accurate prediction of protein-nucleic acid complexes using RoseTTAFoldNA.	Nat Methods	2024
36813896	De novo design of luciferases using deep learning.	Nature	2023
36813896	De novo design of luciferases using deep learning.	Nature	2023
36108050	Robust deep learning-based protein sequence design using ProteinMPNN.	Science	2022
36108050	Robust deep learning-based protein sequence design using ProteinMPNN.	Science	2022
35641150	Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs.	Brief Bioinform	2022
35862514	Scaffolding protein functional sites using deep learning.	Science	2022
35641150	Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs.	Brief Bioinform	2022
35862514	Scaffolding protein functional sites using deep learning.	Science	2022
34331359	Protein tertiary structure prediction and refinement using deep learning and Rosetta in CASP14.	Proteins	2021
33637700	Improved protein structure refinement guided by deep learning based accuracy estimation.	Nat Commun	2021
33712545	Protein sequence design by conformational landscape optimization.	Proc Natl Acad Sci U S A	2021
34331359	Protein tertiary structure prediction and refinement using deep learning and Rosetta in CASP14.	Proteins	2021
34324224	Protein oligomer modeling guided by predicted interchain contacts in CASP14.	Proteins	2021
34853475	De novo protein design by deep network hallucination.	Nature	2021
34762488	Computed structures of core eukaryotic protein complexes.	Science	2021
34759384	The trRosetta server for fast and accurate protein structure prediction.	Nat Protoc	2021
33712545	Protein sequence design by conformational landscape optimization.	Proc Natl Acad Sci U S A	2021
33637700	Improved protein structure refinement guided by deep learning based accuracy estimation.	Nat Commun	2021
34853475	De novo protein design by deep network hallucination.	Nature	2021
34762488	Computed structures of core eukaryotic protein complexes.	Science	2021
34759384	The trRosetta server for fast and accurate protein structure prediction.	Nat Protoc	2021
34324224	Protein oligomer modeling guided by predicted interchain contacts in CASP14.	Proteins	2021
31173061	Protein contact prediction using metagenome sequence data and residual neural networks.	Bioinformatics	2020
31896580	Improved protein structure prediction using predicted interresidue orientations.	Proc Natl Acad Sci U S A	2020
32632011	Structural basis for autophagy inhibition by the human Rubicon-Rab7 complex.	Proc Natl Acad Sci U S A	2020
32939280	Deep learning enables the atomic structure determination of the Fanconi Anemia core complex from cryoEM.	IUCrJ	2020
31173061	Protein contact prediction using metagenome sequence data and residual neural networks.	Bioinformatics	2020
31896580	Improved protein structure prediction using predicted interresidue orientations.	Proc Natl Acad Sci U S A	2020
32939280	Deep learning enables the atomic structure determination of the Fanconi Anemia core complex from cryoEM.	IUCrJ	2020
32632011	Structural basis for autophagy inhibition by the human Rubicon-Rab7 complex.	Proc Natl Acad Sci U S A	2020
30520123	Gene ontology improves template selection in comparative protein docking.	Proteins	2019
30520123	Gene ontology improves template selection in comparative protein docking.	Proteins	2019
31444975	Template-based modeling by ClusPro in CASP13 and the potential for using co-evolutionary information in docking.	Proteins	2019
31296772	Protein interaction networks revealed by proteome coevolution.	Science	2019
31296772	Protein interaction networks revealed by proteome coevolution.	Science	2019
31444975	Template-based modeling by ClusPro in CASP13 and the potential for using co-evolutionary information in docking.	Proteins	2019
28891124	Dockground: A comprehensive data resource for modeling of protein complexes.	Protein Sci	2018
28905425	Modeling CAPRI targets 110-120 by template-based and free docking using contact potential and combined scoring function.	Proteins	2018
28891124	Dockground: A comprehensive data resource for modeling of protein complexes.	Protein Sci	2018
30122295	Contact Potential for Structure Prediction of Proteins and Protein Complexes from Potts Model.	Biophys J	2018
30122295	Contact Potential for Structure Prediction of Proteins and Protein Complexes from Potts Model.	Biophys J	2018
28905425	Modeling CAPRI targets 110-120 by template-based and free docking using contact potential and combined scoring function.	Proteins	2018
27756103	Structural quality of unrefined models in protein docking.	Proteins	2017
28784799	Origins of coevolution between residues distant in protein 3D structures.	Proc Natl Acad Sci U S A	2017
27701777	Modeling complexes of modeled proteins.	Proteins	2017
27756103	Structural quality of unrefined models in protein docking.	Proteins	2017
28784799	Origins of coevolution between residues distant in protein 3D structures.	Proc Natl Acad Sci U S A	2017
27701777	Modeling complexes of modeled proteins.	Proteins	2017

1 - 50 of 68

Chengxin Zhang

University of Michigan ann arbor

Career Start Year 2017

Number of shared co-authors 6

Rosalba Lepore

Basel University Hospital and University of Basel

Career Start Year 2011

Number of shared co-authors 6

Daniel B Roche

Universita degli Studi di Milano - Computer Science Department - AnacletoLab

Career Start Year 2010

Number of shared co-authors 6

Guillaume Launay

CNRS UMR 5086 and Universite Claude Bernard Lyon 1

Career Start Year 2007

Number of shared co-authors 3

Juergen Haas

University of Basel

Career Start Year 2007

Number of shared co-authors 8

Jaume Bonet

Institute of Bioengineering, Ecole Polytechnique Federale de Lausanne

Career Start Year 2006

Number of shared co-authors 9

Jinbo Xu

Toyota Technological Institute at Chicago

Career Start Year 2003

Number of shared co-authors 0

Yang Zhang

University of Michigan ann arbor

Career Start Year 2002

Number of shared co-authors 16

Hao Fan

College of Biotechnology and Bioengineering, Zhejiang University of Technology

Career Start Year 2001

Number of shared co-authors 2

Maya Topf

Leibniz-Institut fur Virologie (LIV)

Career Start Year 2001

Number of shared co-authors 7

Liam J McGuffin

University of Reading

Career Start Year 2000

Number of shared co-authors 13

Torsten Schwede

University of Basel

Career Start Year 1999

Number of shared co-authors 22

Peter W Rose

University of California

Career Start Year 1999

Number of shared co-authors 6

Heather A Carlson

University of Michigan ann arbor

Career Start Year 1999

Number of shared co-authors 1

Daron M Standley

Osaka university

Career Start Year 1998

Number of shared co-authors 43

Nikolay V Dokholyan

Pennsylvania State University College of Medicine

Career Start Year 1998

Number of shared co-authors 5

Roberto Sanchez

Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai

Career Start Year 1996

Number of shared co-authors 4

Mallur S Madhusudhan

Indian Institute of Science Education and Research Pune

Career Start Year 1996

Number of shared co-authors 3

Baldo Oliva

Universitat Pompeu Fabra

Career Start Year 1991

Number of shared co-authors 4

Haim J Wolfson

Tel Aviv University

Career Start Year 1991

Number of shared co-authors 36

Ram Samudrala

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 1990

Number of shared co-authors 2

Carlos J Camacho

University of Pittsburgh

Career Start Year 1990

Number of shared co-authors 23

Roland L Dunbrack

Fox Chase Cancer Center

Career Start Year 1989

Number of shared co-authors 27

Ruben Abagyan

Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California

Career Start Year 1981

Number of shared co-authors 3

Haruki Nakamura

Institute for Protein Research, Osaka University

Career Start Year 1980

Number of shared co-authors 43

Michael J E Sternberg

Imperial College London

Career Start Year 1976

Number of shared co-authors 13

John Moult

Institute for Bioscience and Biotechnology Research

Career Start Year 1970

Number of shared co-authors 10

Michael Levitt

Stanford University

Career Start Year 1969

Number of shared co-authors 13

Andras Fiser

Albert Einstein College of Medicine

Career Start Year 1968

Number of shared co-authors 8

Jens Meiler

Vanderbilt University

Career Start Year 1954

Number of shared co-authors 10

row(s) 1 - 30 of 30

David Baker

University of Washington

Co-authored papers 18

Petras J Kundrotas

The University of Kansas

Co-authored papers 10

Ilya A Vakser

The University of Kansas

Co-authored papers 10

Minkyung Baek

Seoul National University

Co-authored papers 7

Frank DiMaio

University of Washington

Co-authored papers 5

Hahnbeom Park

Co-authored papers 4

Dmitri Beglov

Boston University

Co-authored papers 2

Dima Kozakov

Stony Brook University

Co-authored papers 2

Sandor Vajda

Boston University

Co-authored papers 2

Sameer Velankar

European Bioinformatics Institute

Co-authored papers 2

Zhiping Weng

University of Massachusetts Medical School

Co-authored papers 1

Tyler Borrman

University of Massachusetts Medical School

Co-authored papers 1

Panagiotis L Kastritis

Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg

Co-authored papers 1

Jilong Li

Qiagen Inc.

Co-authored papers 1

Keehyoung Joo

Center for Advanced Computation, Korea Institute for Advanced Study

Co-authored papers 1

Eiichiro Ichiishi

International University of Health and Welfare (IUHV Hospital)

Co-authored papers 1

Anisah W Ghoorah

University of Mauritius

Co-authored papers 1

Neil J Bruce

Heidelberg Institute for Theoretical Studies (HITS)

Co-authored papers 1

Zhiwei Ma

Dalton Cardiovascular Research Center, University of Missouri

Co-authored papers 1

Liming Qiu

Perelman School of Medicine, University of Pennsylvania

Co-authored papers 1

Josep Rizo

University of Texas Southwestern Medical Center

Co-authored papers 1

Artem B Mamonov

MGH/Harvard Medical School

Co-authored papers 1

Gaetano T Montelione

Rensselaer Polytechnic Institute

Co-authored papers 1

Neeladri Sen

Institute of Structural and Molecular Biology, University College London

Co-authored papers 1

Brian Jim??nez-Garc??a

Utrecht University

Co-authored papers 1

Iain H Moal

GSK Medicines Research Centre

Co-authored papers 1

Rebecca C Wade

Center for Molecular Biology (ZMBH), Heidelberg University

Co-authored papers 1

Jooyoung Lee

Korea Institute for Advanced Study

Co-authored papers 1

Mikhail Ignatov

Co-authored papers 1

Bernard Maigret

Universite de Lorraine, CNRS

Co-authored papers 1

1 - 30

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