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Author Details

Sean K Maden
Oregon Health & Science University
2013
13
9
PMIDPaper TitleJournal TitlePublished Year
36874953recountmethylation enables flexible analysis of public blood DNA methylation array data.Bioinform Adv2023
37214135Challenges and opportunities to computationally deconvolve heterogeneous tissue with varying cell sizes using single cell RNA-sequencing datasets.ArXiv2023
36369064Retained introns in long RNA-seq reads are not reliably detected in sample-matched short reads.Genome Biol2022
33937763Human methylome variation across Infinium 450K data on the Gene Expression Omnibus.NAR Genom Bioinform2021
32303592Human Leukocyte Antigen Susceptibility Map for Severe Acute Respiratory Syndrome Coronavirus 2.J Virol2020
34316681Putatively cancer-specific exon-exon junctions are shared across patients and present in developmental and other non-cancer cells.NAR Cancer2020
31900199Dysfunctional epigenetic aging of the normal colon and colorectal cancer risk.Clin Epigenetics2020
30291105Implications of Epigenetic Drift in Colorectal Neoplasia.Cancer Res2019
29884612Subtypes of Barrett's oesophagus and oesophageal adenocarcinoma based on genome-wide methylation analysis.Gut2019
31389184Senescence-associated tissue microenvironment promotes colon cancer formation through the secretory factor GDF15.Aging Cell2019
28982739Discovery of methylated circulating DNA biomarkers for comprehensive non-invasive monitoring of treatment response in metastatic colorectal cancer.Gut2018
29046735Identification of a key role of widespread epigenetic drift in Barrett's esophagus and esophageal adenocarcinoma.Clin Epigenetics2017
24330840Dietary fatty acid intake is associated with paraoxonase 1 activity in a cohort-based analysis of 1,548 subjects.Lipids Health Dis2013
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Collaborators

William M Grady
. Fred Hutchinson Cancer Center
Co-authored papers 6
Reid F Thompson
Oregon Health and Sciences University
Co-authored papers 5
Abhinav Nellore
Oregon Health & Science University
Co-authored papers 5
Mary A Wood
Phase Genomics Inc.
Co-authored papers 2
Kasper D Hansen
Johns Hopkins University School of Medicine
Co-authored papers 2
Amitabh Chak
Co-authored papers 2
Brian Walsh
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Co-authored papers 1
Gail P Jarvik
University of Washington Medical Center
Co-authored papers 1
Adam J Bass
Co-authored papers 1
Sanford D Markowitz
Co-authored papers 1
Stephanie C Hicks
Johns Hopkins Bloomberg School of Public Health
Co-authored papers 1
Kyle Ellrott
Oregon Health & Science University
Co-authored papers 1
Roger L Milne
Co-authored papers 1
Release 1.2