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Author Details

Boris Lenhard
MRC London Institute of Medical Sciences
1996
157
65
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37962376JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles.Nucleic Acids Res2024
37962376JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles.Nucleic Acids Res2024
37188674Integrative genomic analyses in adipocytes implicate DNA methylation in human obesity and diabetes.Nat Commun2023
37591842A deep learning method for replicate-based analysis of chromosome conformation contacts using Siamese neural networks.Nat Commun2023
37983292Identifying promoter sequence architectures via a chunking-based algorithm using non-negative matrix factorisation.PLoS Comput Biol2023
37188674Integrative genomic analyses in adipocytes implicate DNA methylation in human obesity and diabetes.Nat Commun2023
37591842A deep learning method for replicate-based analysis of chromosome conformation contacts using Siamese neural networks.Nat Commun2023
37983292Identifying promoter sequence architectures via a chunking-based algorithm using non-negative matrix factorisation.PLoS Comput Biol2023
35293570Dysregulated RNA polyadenylation contributes to metabolic impairment in non-alcoholic fatty liver disease.Nucleic Acids Res2022
36182691Chromatin jets define the properties of cohesin-driven in vivo loop extrusion.Mol Cell2022
35789323Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements.Nat Genet2022
36536133Liver RBFOX2 regulates cholesterol homeostasis via Scarb1 alternative splicing in mice.Nat Metab2022
35293570Dysregulated RNA polyadenylation contributes to metabolic impairment in non-alcoholic fatty liver disease.Nucleic Acids Res2022
34850907JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles.Nucleic Acids Res2022
35789323Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements.Nat Genet2022
36536133Liver RBFOX2 regulates cholesterol homeostasis via Scarb1 alternative splicing in mice.Nat Metab2022
36182691Chromatin jets define the properties of cohesin-driven in vivo loop extrusion.Mol Cell2022
34850907JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles.Nucleic Acids Res2022
33239821Publisher Correction: Conservative route to genome compaction in a miniature annelid.Nat Ecol Evol2021
34011993Author Correction: RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.Nat Commun2021
33627486Functional reconstruction of human AML reveals stem cell origin and vulnerability of treatment-resistant MLL-rearranged leukemia.Sci Transl Med2021
34006846Neuronal genes deregulated in Cornelia de Lange Syndrome respond to removal and re-expression of cohesin.Nat Commun2021
33774035Computational Resources for Molecular Biology 2021.J Mol Biol2021
33651978Germ cell differentiation requires Tdrd7-dependent chromatin and transcriptome reprogramming marked by germ plasm relocalization.Dev Cell2021
33199869Conservative route to genome compaction in a miniature annelid.Nat Ecol Evol2021
33239821Publisher Correction: Conservative route to genome compaction in a miniature annelid.Nat Ecol Evol2021
33340372Integrator is recruited to promoter-proximally paused RNA Pol II to generate Caenorhabditis elegans piRNA precursors.EMBO J2021
33397934The order and logic of CD4 versus CD8 lineage choice and differentiation in mouse thymus.Nat Commun2021
34811400Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics.Sci Rep2021
33627486Functional reconstruction of human AML reveals stem cell origin and vulnerability of treatment-resistant MLL-rearranged leukemia.Sci Transl Med2021
33651978Germ cell differentiation requires Tdrd7-dependent chromatin and transcriptome reprogramming marked by germ plasm relocalization.Dev Cell2021
33774035Computational Resources for Molecular Biology 2021.J Mol Biol2021
34811400Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics.Sci Rep2021
34011993Author Correction: RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.Nat Commun2021
34006846Neuronal genes deregulated in Cornelia de Lange Syndrome respond to removal and re-expression of cohesin.Nat Commun2021
33199869Conservative route to genome compaction in a miniature annelid.Nat Ecol Evol2021
33340372Integrator is recruited to promoter-proximally paused RNA Pol II to generate Caenorhabditis elegans piRNA precursors.EMBO J2021
33397934The order and logic of CD4 versus CD8 lineage choice and differentiation in mouse thymus.Nat Commun2021
31616042Understanding the genetics of neuropsychiatric disorders: the potential role of genomic regulatory blocks.Mol Psychiatry2020
32268280Ancestrally Duplicated Conserved Noncoding Element Suggests Dual Regulatory Roles of HOTAIR in cis and trans.iScience2020
32298696Computational Resources for Molecular Biology: Special Issue 2020.J Mol Biol2020
31616042Understanding the genetics of neuropsychiatric disorders: the potential role of genomic regulatory blocks.Mol Psychiatry2020
32094342RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.Nat Commun2020
31924754Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing.Nat Commun2020
31701148JASPAR 2020: update of the open-access database of transcription factor binding profiles.Nucleic Acids Res2020
32584820------Widespread conservation and lineage-specific diversification of genome-wide DNA methylation patterns across arthropods.PLoS Genet2020
33353944TBPL2/TFIIA complex establishes the maternal transcriptome through oocyte-specific promoter usage.Nat Commun2020
32619237Embryonic tissue differentiation is characterized by transitions in cell cycle dynamic-associated core promoter regulation.Nucleic Acids Res2020
31701148JASPAR 2020: update of the open-access database of transcription factor binding profiles.Nucleic Acids Res2020
31924754Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing.Nat Commun2020
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Collaborators

Albin Sandelin
University of Copenhagen
Co-authored papers 26
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 26
Wyeth W Wasserman
BC Children's Hospital Research Institute, University of British Columbia
Co-authored papers 23
Pär G Engström
Co-authored papers 20
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 19
Altuna Akalin
Berlin Institute for Medical Systems Biology
Co-authored papers 13
Jun Kawai
RIKEN Center for Integrative Medical Sciences
Co-authored papers 12
Claes Wahlestedt
Co-authored papers 11
Ferenc M??ller
University of Birmingham
Co-authored papers 11
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 10
Vanja Haberle
Research Institute of Molecular Pathology (IMP)
Co-authored papers 10
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 10
Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 9
Charles Plessy
Okinawa Institute of Science and Technology
Co-authored papers 9
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 8
Timothy Ravasi
Okinawa Institute of Science and Technology Graduate University
Co-authored papers 8
Christine A Wells
The University of Melbourne
Co-authored papers 8
Anthony Mathelier
University of Oslo
Co-authored papers 8
Winston Hide
Harvard Medical School
Co-authored papers 7
Valerio Orlando
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 7
Piotr J Balwierz
MRC London Institute of Medical Sciences
Co-authored papers 7
Shintaro Katayama
Folkhalsan Research Center
Co-authored papers 7
Chikatoshi Kai
Co-authored papers 7
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 7
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 7
Stefano Gustincich
Istituto Italiano di Tecnologia
Co-authored papers 6
Sean M Grimmond
The University of Melbourne
Co-authored papers 6
Vladimir B Bajic
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 6
Colin A Semple
Institute of Genetics and Cancer, University of Edinburgh
Co-authored papers 6
Martin S Taylor
Institute of Genetics and Cancer, University of Edinburgh
Co-authored papers 6
Release 1.2