Author details

Full Name

Jesualdo Tom??s Fern??ndez-Breis

Affiliation

Universidad de Murcia

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36323370	Improvement of large copy number variant detection by whole genome nanopore sequencing.	J Adv Res	2023
37953943	Detection and annotation of transposable element insertions and deletions on the human genome using nanopore sequencing.	iScience	2023
36778675	Flower transcriptional response to long term hot and cold environments in <i>Antirrhinum majus</i>.	Front Plant Sci	2023
35998169	Using Machine Learning for Predicting the Effect of Mutations in the Initiation Codon.	IEEE J Biomed Health Inform	2022
35841031	Performance assessment of ontology matching systems for FAIR data.	J Biomed Semantics	2022
35367914	An automated process for supporting decisions in clustering-based data analysis.	Comput Methods Programs Biomed	2022
35685360	Analysis of the landscape of human enhancer sequences in biological databases.	Comput Struct Biotechnol J	2022
34710644	Formalization of gene regulation knowledge using ontologies and gene ontology causal activity models.	Biochim Biophys Acta Gene Regul Mech	2021
30715146	Evaluation of ontology structural metrics based on public repository data.	Brief Bioinform	2020
33319711	Analysis of readability and structural accuracy in SNOMED CT.	BMC Med Inform Decis Mak	2020
32629294	CLIN-IK-LINKS: A platform for the design and execution of clinical data transformation and reasoning workflows.	Comput Methods Programs Biomed	2020
32308977	BioHackathon 2015: Semantics of data for life sciences and reproducible research.	F1000Res	2020
31150379	Quorum sensing and stress-activated MAPK signaling repress yeast to hypha transition in the fission yeast Schizosaccharomyces japonicus.	PLoS Genet	2019
31672979	ColPortal, an integrative multiomic platform for analysing epigenetic interactions in colorectal cancer.	Sci Data	2019
31323044	Correction: Quorum sensing and stress-activated MAPK signaling repress yeast to hypha transition in the fission yeast Schizosaccharomyces japonicus.	PLoS Genet	2019
28968857	Gearing up to handle the mosaic nature of life in the quest for orthologs.	Bioinformatics	2018
29908358	From lexical regularities to axiomatic patterns for the quality assurance of biomedical terminologies and ontologies.	J Biomed Inform	2018
29868922	Lost in translation: bioinformatic analysis of variations affecting the translation initiation codon in the human genome.	Bioinformatics	2018
30815135	Towards the semantic enrichment of Computer Interpretable Guidelines: a method for the identification of relevant ontological terms.	AMIA Annu Symp Proc	2018
28962670	Analysis and visualization of disease courses in a semantically-enabled cancer registry.	J Biomed Semantics	2017
28269882	A platform for exploration into chaining of web services for clinical data transformation and reasoning.	AMIA Annu Symp Proc	2017
28423828	Preliminary Analysis of the OBO Foundry Ontologies and Their Evolution Using OQuaRE.	Stud Health Technol Inform	2017
28423826	Combining Archetypes, Ontologies and Formalization Enables Automated Computation of Quality Indicators.	Stud Health Technol Inform	2017
27577409	Suggesting Missing Relations in Biomedical Ontologies Based on Lexical Regularities.	Stud Health Technol Inform	2016
27751176	Supporting the analysis of ontology evolution processes through the combination of static and dynamic scaling functions in OQuaRE.	J Biomed Semantics	2016
27259657	The Orthology Ontology: development and applications.	J Biomed Semantics	2016
27255189	Generation of open biomedical datasets through ontology-driven transformation and integration processes.	J Biomed Semantics	2016
27577489	Publishing Biomedical Predication Repository About MeSH Co-Occurrences in MEDLINE.	Stud Health Technol Inform	2016
24993110	Prioritising lexical patterns to increase axiomatisation in biomedical ontologies. The role of localisation and modularity.	Methods Inf Med	2015
25991123	Lessons learned in the generation of biomedical research datasets using Semantic Open Data technologies.	Stud Health Technol Inform	2015
25670753	Transformation of standardized clinical models based on OWL technologies: from CEM to OpenEHR archetypes.	J Am Med Inform Assoc	2015
25488031	Approaching the axiomatic enrichment of the Gene Ontology from a lexical perspective.	Artif Intell Med	2015
25160342	Ontology patterns-based transformation of clinical information.	Stud Health Technol Inform	2014
25148262	Evaluating the Good Ontology Design Guideline (GoodOD) with the ontology quality requirements and evaluation method and metrics (OQuaRE).	PLoS One	2014
23286517	OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows.	J Biomed Semantics	2013
23920859	Isosemantic rendering of clinical information using formal ontologies and RDF.	Stud Health Technol Inform	2013
23934950	Leveraging electronic healthcare record standards and semantic web technologies for the identification of patient cohorts.	J Am Med Inform Assoc	2013
23246613	OWL-based reasoning methods for validating archetypes.	J Biomed Inform	2013
21968574	A generative tool for building health applications driven by ISO 13606 archetypes.	J Med Syst	2012
23149630	Linking genome annotation projects with genetic disorders using ontologies.	J Med Syst	2012
22874336	Recommendation of standardized health learning contents using archetypes and semantic web technologies.	Stud Health Technol Inform	2012
22142945	Using the ResearchEHR platform to facilitate the practical application of the EHR standards.	J Biomed Inform	2012
21645637	Clinical data interoperability based on archetype transformation.	J Biomed Inform	2011
21864715	Semantic integration of information about orthologs and diseases: the OGO system.	J Biomed Inform	2011
21893855	Validation of the openEHR archetype library by using OWL reasoning.	Stud Health Technol Inform	2011
20004039	An incremental knowledge acquisition-based system for supporting decisions in biomedical domains.	Comput Methods Programs Biomed	2010
20543320	ResearchEHR: use of semantic web technologies and archetypes for the description of EHRs.	Stud Health Technol Inform	2010
20561912	An approach for the semantic interoperability of ISO EN 13606 and OpenEHR archetypes.	J Biomed Inform	2010
18590985	A model-driven approach for representing clinical archetypes for Semantic Web environments.	J Biomed Inform	2009
19796397	OGO: an ontological approach for integrating knowledge about orthology.	BMC Bioinformatics	2009

1 - 50 of 59

Alejandro Metke-Jimenez

Australian e-Health Research Centre

Career Start Year 2015

Number of shared co-authors 6

Rajaram Kaliyaperumal

Leiden University Medical Center

Career Start Year 2015

Number of shared co-authors 12

Licong Cui

The University of Texas Health Science Center at Houston

Career Start Year 2011

Number of shared co-authors 1

Vianney Jouhet

Harvard Medical School

Career Start Year 2009

Number of shared co-authors 1

Simon Jupp

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2009

Number of shared co-authors 11

Eric Prud'hommeaux

Massachusetts Institutes of Technology

Career Start Year 2009

Number of shared co-authors 3

James Malone

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2009

Number of shared co-authors 13

Ernesto Jim??nez-Ruiz

City University of London

Career Start Year 2008

Number of shared co-authors 3

Tania Tudorache

Stanford University

Career Start Year 2008

Number of shared co-authors 5

Csongor Nyulas

Stanford University

Career Start Year 2008

Number of shared co-authors 1

Christopher J O Baker

University of New Brunswick

Career Start Year 2007

Number of shared co-authors 6

Mathias Brochhausen

College of Medicine, University of Arkansas for Medical Sciences

Career Start Year 2006

Number of shared co-authors 2

Daniel Schober

Institute of Forensic Medicine, University of Bern

Career Start Year 2005

Number of shared co-authors 8

Alan Ruttenberg

University at Buffalo

Career Start Year 2003

Number of shared co-authors 5

Barry Smith

University at Buffalo

Career Start Year 2003

Number of shared co-authors 12

Vipul Kashyap

ICAR-National Dairy Research Institute

Career Start Year 2003

Number of shared co-authors 1

Dietrich Rebholz-Schuhmann

University of Cologne

Career Start Year 2003

Number of shared co-authors 6

Jos?? Lu??s Oliveira

University of Aveiro

Career Start Year 2002

Number of shared co-authors 3

Anand Kumar

Queens Medical Centre, Nottingham University Hospital NHS Trust

Career Start Year 2002

Number of shared co-authors 2

Guoqian Jiang

Mayo Clinic Rochester Minnesota USA.

Career Start Year 2002

Number of shared co-authors 3

Harold R Solbrig

Johns Hopkins University

Career Start Year 1998

Number of shared co-authors 6

Victor Maojo

Universidad Politecnica de Madrid

Career Start Year 1997

Number of shared co-authors 0

Yehoshua Perl

New Jersey Institute of Technology

Career Start Year 1996

Number of shared co-authors 2

James Geller

New Jersey Institute of Technology

Career Start Year 1996

Number of shared co-authors 1

Olivier Bodenreider

National Institutes of Health

Career Start Year 1993

Number of shared co-authors 6

Erik M van Mulligen

Erasmus University Medical Center

Career Start Year 1991

Number of shared co-authors 7

Jean-Marie Rodrigues

Universite Jean Monnet Saint Etienne/Universite de Lyon, CHU de Saint-Etienne

Career Start Year 1989

Number of shared co-authors 2

Werner Ceusters

University at Buffalo

Career Start Year 1987

Number of shared co-authors 3

Mark A Musen

Stanford Center for Biomedical Informatics Research, Stanford University

Career Start Year 1987

Number of shared co-authors 6

Alan Rector

University of Manchester

Career Start Year 1975

Number of shared co-authors 4

row(s) 1 - 30 of 30

Marcos Men??rguez-Tortosa

Universidad de Murcia

Co-authored papers 17

Mar??a Del Carmen Legaz-Garc??a

Institute for Biomedical Research of Murcia (IMIB)

Co-authored papers 13

Catalina Mart??nez-Costa

Universidad de Murcia

Co-authored papers 11

Diego Bosc??

ITACA Institute, Universitat Politecnica de Val'encia

Co-authored papers 8

Stefan Schulz

Institute for Medical Informatics, Medical University of Graz

Co-authored papers 4

Ronald Cornet

University of Amsterdam

Co-authored papers 3

Robert Stevens

The University of Manchester

Co-authored papers 3

Martin Boeker

Institute of AI and Informatics in Medicine, Technical University of Munich

Co-authored papers 2

Mark D Wilkinson

Universidad Politecnica de Madrid (UPM)

Co-authored papers 2

Cui Tao

The University of Texas Health Science Center at Houston

Co-authored papers 2

Christopher G Chute

Brown University, Brown University Warren Alpert Medical School, Dartmouth-Hitchcock Medical Center, Harvard School of Public Health, Johns Hopkins Medicine, Mayo Clinic Minnesota

Co-authored papers 2

Mikel Ega??a Aranguren

University of Basque Country (UPV/EHU)

Co-authored papers 2

Erick Antezana

Norwegian University of Science and Technology

Co-authored papers 2

Christophe Dessimoz

University of Lausanne

Co-authored papers 1

Toshiaki Katayama

Database Center for Life Science