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Author Details

Haiyan Huang
Washington State University
2004
47
23
PMIDPaper TitleJournal TitlePublished Year
37202927Streamline unsupervised machine learning to survey and graph indel-based haplotypes from pan-genomes.Mol Plant2023
37202927Streamline unsupervised machine learning to survey and graph indel-based haplotypes from pan-genomes.Mol Plant2023
35793527Shared Differential Expression-Based Distance Reflects Global Cell Type Relationships in Single-Cell RNA Sequencing Data.J Comput Biol2022
35793527Shared Differential Expression-Based Distance Reflects Global Cell Type Relationships in Single-Cell RNA Sequencing Data.J Comput Biol2022
34404787Measuring expression heterogeneity of single-cell cytoskeletal protein complexes.Nat Commun2021
33682877Bipartite graph-based approach for clustering of cell lines by gene expression-drug response associations.Bioinformatics2021
34404787Measuring expression heterogeneity of single-cell cytoskeletal protein complexes.Nat Commun2021
34758315Klf5 establishes bi-potential cell fate by dual regulation of ICM and TE specification genes.Cell Rep2021
33682877Bipartite graph-based approach for clustering of cell lines by gene expression-drug response associations.Bioinformatics2021
34758315Klf5 establishes bi-potential cell fate by dual regulation of ICM and TE specification genes.Cell Rep2021
32472029Probe-target hybridization depends on spatial uniformity of initial concentration condition across large-format chips.Sci Rep2020
32472029Probe-target hybridization depends on spatial uniformity of initial concentration condition across large-format chips.Sci Rep2020
31915399Single-chain heteropolymers transport protons selectively and rapidly.Nature2020
31915399Single-chain heteropolymers transport protons selectively and rapidly.Nature2020
30864327AICM: A Genuine Framework for Correcting Inconsistency Between Large Pharmacogenomics Datasets.Pac Symp Biocomput2019
30864327AICM: A Genuine Framework for Correcting Inconsistency Between Large Pharmacogenomics Datasets.Pac Symp Biocomput2019
31484776GeneFishing to reconstruct context specific portraits of biological processes.Proc Natl Acad Sci U S A2019
31484776GeneFishing to reconstruct context specific portraits of biological processes.Proc Natl Acad Sci U S A2019
29040382Generalized correlation measure using count statistics for gene expression data with ordered samples.Bioinformatics2018
29040382Generalized correlation measure using count statistics for gene expression data with ordered samples.Bioinformatics2018
29872719Electrophoretic cytopathology resolves ERBB2 forms with single-cell resolution.NPJ Precis Oncol2018
29299576Linking invasive motility to protein expression in single tumor cells.Lab Chip2018
29771290Single cell clustering based on cell-pair differentiability correlation and variance analysis.Bioinformatics2018
29872719Electrophoretic cytopathology resolves ERBB2 forms with single-cell resolution.NPJ Precis Oncol2018
29771290Single cell clustering based on cell-pair differentiability correlation and variance analysis.Bioinformatics2018
29299576Linking invasive motility to protein expression in single tumor cells.Lab Chip2018
28657835Identifying Cell Subpopulations and Their Genetic Drivers from Single-Cell RNA-Seq Data Using a Biclustering Approach.J Comput Biol2017
28332571Profiling protein expression in circulating tumour cells using microfluidic western blotting.Nat Commun2017
28657835Identifying Cell Subpopulations and Their Genetic Drivers from Single-Cell RNA-Seq Data Using a Biclustering Approach.J Comput Biol2017
30774736SIDEseq: A Cell Similarity Measure Defined by Shared Identified Differentially Expressed Genes for Single-Cell RNA sequencing Data.Stat Biosci2017
30774736SIDEseq: A Cell Similarity Measure Defined by Shared Identified Differentially Expressed Genes for Single-Cell RNA sequencing Data.Stat Biosci2017
28332571Profiling protein expression in circulating tumour cells using microfluidic western blotting.Nat Commun2017
24726980Review on statistical methods for gene network reconstruction using expression data.J Theor Biol2014
25288767Gene coexpression measures in large heterogeneous samples using count statistics.Proc Natl Acad Sci U S A2014
25316374Prediction of LDL cholesterol response to statin using transcriptomic and genetic variation.Genome Biol2014
24726980Review on statistical methods for gene network reconstruction using expression data.J Theor Biol2014
24985912Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data.Genome Res2014
25164757Comparative analysis of regulatory information and circuits across distant species.Nature2014
25164755Comparative analysis of the transcriptome across distant species.Nature2014
25288767Gene coexpression measures in large heterogeneous samples using count statistics.Proc Natl Acad Sci U S A2014
25316374Prediction of LDL cholesterol response to statin using transcriptomic and genetic variation.Genome Biol2014
24985912Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data.Genome Res2014
25164757Comparative analysis of regulatory information and circuits across distant species.Nature2014
25164755Comparative analysis of the transcriptome across distant species.Nature2014
23407661Sorting single satellite cells from individual myofibers reveals heterogeneity in cell-surface markers and myogenic capacity.Integr Biol (Camb)2013
23407661Sorting single satellite cells from individual myofibers reveals heterogeneity in cell-surface markers and myogenic capacity.Integr Biol (Camb)2013
22271267Using biologically interrelated experiments to identify pathway genes in Arabidopsis.Bioinformatics2012
22697238Biclustering of linear patterns in gene expression data.J Comput Biol2012
22271267Using biologically interrelated experiments to identify pathway genes in Arabidopsis.Bioinformatics2012
22697238Biclustering of linear patterns in gene expression data.J Comput Biol2012
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Collaborators

Peter J Bickel
Co-authored papers 7
Li Cai
University of Texas MD Anderson Cancer Center
Co-authored papers 5
Wing Hung Wong
Stanford University
Co-authored papers 5
Amy E Herr
University of California berkeley
Co-authored papers 5
Xianghong Jasmine Zhou
David Geffen School of Medicine, University of California at Los Angeles
Co-authored papers 4
James B Brown
Co-authored papers 4
Mark Gerstein
Yale University
Co-authored papers 3
Peter J Good
Co-authored papers 3
Steven E Brenner
University of California berkeley
Co-authored papers 3
Elise A Feingold
Co-authored papers 3
Michael S Waterman
Biocomplexity Institute and Initiative
Co-authored papers 3
Joel Rozowsky
Co-authored papers 3
Jun Yu
Beijing Institute of Genomics, Chinese Academy of Sciences
Co-authored papers 2
Seth Blackshaw
Johns Hopkins University School of Medicine.
Co-authored papers 2
Jennifer Harrow
Co-authored papers 2
Michael Snyder
Stanford University
Co-authored papers 2
Jorg Drenkow
Co-authored papers 2
Roderic Guig??
Barcelona Institute of Science and Technology
Co-authored papers 2
Jian Wang
Institute of Medical Research, Northwestern Polytechnical University
Co-authored papers 2
Thomas R Gingeras
Stanley Institute for Cognitive Genomics
Co-authored papers 2
Constance L Cepko
Howard Hughes Medical Institute, Harvard Medical School
Co-authored papers 2
Adam Frankish
Co-authored papers 2
Daifeng Wang
University of Wisconsin-Madison
Co-authored papers 2
Huanming Yang
Experimental Research Center, China Academy of Chinese Medical Sciences
Co-authored papers 2
Alexandre Reymond
Co-authored papers 2
Andrea Tanzer
Co-authored papers 2
Chao Cheng
Baylor College of Medicine
Co-authored papers 2
Jun Wang
Zhongnan Hospital of Wuhan University
Co-authored papers 2
Michael J Pazin
Co-authored papers 2
Koon-Kiu Yan
Co-authored papers 2
Release 1.2