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Author Details

Richard S Johnson
University of Washington-Genome Sciences
1987
74
43
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36993225MBNL1 regulates programmed postnatal switching between regenerative and differentiated cardiac states.bioRxiv2023
34738832Host Plant Adaptation Drives Changes in <i>Diaphorina citri</i> Proteome Regulation, Proteoform Expression, and Transmission of '<i>Candidatus</i> Liberibacter asiaticus', the Citrus Greening Pathogen.Phytopathology2022
35416576Age-related disruption of the proteome and acetylome in mouse hearts is associated with loss of function and attenuated by elamipretide (SS-31) and nicotinamide mononucleotide (NMN) treatment.Geroscience2022
35019203The metabolome as a biomarker of aging in Drosophila melanogaster.Aging Cell2022
34287056Identification of Actin Filament-Associated Proteins in Giardia lamblia.Microbiol Spectr2021
34518698De novo design of tyrosine and serine kinase-driven protein switches.Nat Struct Mol Biol2021
34019426Affinity Purification-Mass Spectrometry Identifies a Novel Interaction between a Polerovirus and a Conserved Innate Immunity Aphid Protein that Regulates Transmission Efficiency.J Proteome Res2021
32037832Peptidomics Approaches for the Identification of Bioactive Molecules from <i>Diaphorina citri</i>.J Proteome Res2020
30536871Time-resolved interaction proteomics of the GIGANTEA protein under diurnal cycles in Arabidopsis.FEBS Lett2019
29903865Novel phosphorylation states of the yeast spindle pole body.Biol Open2018
28628608TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis.PLoS Genet2017
28191870The Ndc80 complex bridges two Dam1 complex rings.Elife2017
26968363Structure of γ-tubulin small complex based on a cryo-EM map, chemical cross-links, and a remotely related structure.J Struct Biol2016
26498839Age modifies respiratory complex I and protein homeostasis in a muscle type-specific manner.Aging Cell2016
27805565Computationally designed high specificity inhibitors delineate the roles of BCL2 family proteins in cancer.Elife2016
26867746Selecting Optimal Peptides for Targeted Proteomic Experiments in Human Plasma Using In Vitro Synthesized Proteins as Analytical Standards.Methods Mol Biol2016
25812159Kojak: efficient analysis of chemically cross-linked protein complexes.J Proteome Res2015
26430240Regulation of outer kinetochore Ndc80 complex-based microtubule attachments by the central kinetochore Mis12/MIND complex.Proc Natl Acad Sci U S A2015
26560693The molecular architecture of the Dam1 kinetochore complex is defined by cross-linking based structural modelling.Nat Commun2015
25996789Multiplexed peptide analysis using data-independent acquisition and Skyline.Nat Protoc2015
24496601Implementation of statistical process control for proteomic experiments via LC MS/MS.J Am Soc Mass Spectrom2014
25422419Distinct roles of FKF1, Gigantea, and Zeitlupe proteins in the regulation of Constans stability in Arabidopsis photoperiodic flowering.Proc Natl Acad Sci U S A2014
25230952Kinetochore biorientation in Saccharomyces cerevisiae requires a tightly folded conformation of the Ndc80 complex.Genetics2014
25041621Hyaluronan enhances wound repair and increases collagen III in aged dermal wounds.Wound Repair Regen2014
22186714Nanospray FAIMS fractionation provides significant increases in proteome coverage of unfractionated complex protein digests.Mol Cell Proteomics2012
21472540Electron-capture and -transfer dissociation of peptides tagged with tunable fixed-charge groups: structures and dissociation energetics.J Am Soc Mass Spectrom2011
18098265Processing of N-terminal unnatural amino acids in recombinant human interferon-beta in Escherichia coli.Chembiochem2008
15781451Nectin-like protein 2 defines a subset of T-cell zone dendritic cells and is a ligand for class-I-restricted T-cell-associated molecule.J Biol Chem2005
15722219Informatics for protein identification by mass spectrometry.Methods2005
12766232Isolation and isotope labeling of cysteine- and methionine-containing tryptic peptides: application to the study of cell surface proteolysis.Mol Cell Proteomics2003
12954170Studies of ligand-induced site-specific phosphorylation of epidermal growth factor receptor.J Am Soc Mass Spectrom2003
14587281Substrate specificity and inducibility of TACE (tumour necrosis factor alpha-converting enzyme) revisited: the Ala-Val preference, and induced intrinsic activity.Biochem Soc Symp2003
11864968Purification, cloning, and characterization of Nek8, a novel NIMA-related kinase, and its candidate substrate Bicd2.J Biol Chem2002
12448884Searching sequence databases via de novo peptide sequencing by tandem mass spectrometry.Mol Biotechnol2002
12096138A proteomic approach for the identification of cell-surface proteins shed by metalloproteases.Mol Cell Proteomics2002
11403305Implementation and uses of automated de novo peptide sequencing by tandem mass spectrometry.Anal Chem2001
10713123Biochemical characterization of endogenously formed eosinophilic crystals in the lungs of mice.J Biol Chem2000
10948496Searching sequence databases via de novo peptide sequencing by tandem mass spectrometry.Methods Mol Biol2000
9812885An essential role for ectodomain shedding in mammalian development.Science1998
9586637A poxvirus-encoded semaphorin induces cytokine production from monocytes and binds to a novel cellular semaphorin receptor, VESPR.Immunity1998
9631522Expression and purification of correctly processed, active human TACE catalytic domain in Saccharomyces cerevisiae.Protein Expr Purif1998
9774383Evidence that tumor necrosis factor alpha converting enzyme is involved in regulated alpha-secretase cleavage of the Alzheimer amyloid protein precursor.J Biol Chem1998
9034190A metalloproteinase disintegrin that releases tumour-necrosis factor-alpha from cells.Nature1997
9204580Sequence database searches via de novo peptide sequencing by tandem mass spectrometry.Rapid Commun Mass Spectrom1997
9311998TRAIL-R2: a novel apoptosis-mediating receptor for TRAIL.EMBO J1997
9098894Monitoring calcium-induced conformational changes in recoverin by electrospray mass spectrometry.Protein Sci1997
8624418Sherpa: a Macintosh-based expert system for the interpretation of electrospray ionization LC/MS and MS/MS data from protein digests.Rapid Commun Mass Spectrom1996
24203423Mass spectrometric measurement of changes in protein hydrogen exchange rates that result from point mutations.J Am Soc Mass Spectrom1996
8753775Relaxed specificity of matrix metalloproteinases (MMPS) and TIMP insensitivity of tumor necrosis factor-alpha (TNF-alpha) production suggest the major TNF-alpha converting enzyme is not an MMP.Biochem Biophys Res Commun1996
7651173High-resolution structural determination of protein-linked acyl groups.Methods Enzymol1995
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Collaborators

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Co-authored papers 24
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Co-authored papers 2
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Icahn School of Medicine at Mount Sinai
Co-authored papers 1
Pennsylvania Muscle Institute, University of Pennsylvania Perelman School of Medicine
Co-authored papers 1
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Co-authored papers 1
Co-authored papers 1
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Co-authored papers 1
University of California, USA Quantitative Biosciences Institute (QBI) san francisco
Co-authored papers 1
University of Washington
Co-authored papers 1
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Broad Institute of MIT and Harvard
Co-authored papers 1
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TheScripps Research Institute
Co-authored papers 1
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Co-authored papers 1
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