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Author Details

Alessandro Bonetti
RIKEN Center for Integrative Medical Sciences
2012
16
10
PMIDPaper TitleJournal TitlePublished Year
35882231Recombination of repeat elements generates somatic complexity in human genomes.Cell2022
36239395A universal model of RNA.DNA:DNA triplex formation accurately predicts genome-wide RNA-DNA interactions.Brief Bioinform2022
35961773Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs.Genome Res2022
33211864FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs.Nucleic Acids Res2021
34382191Analysis of Enhancer-Promoter Interactions using CAGE and RADICL-Seq Technologies.Methods Mol Biol2021
34011993Author Correction: RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.Nat Commun2021
32486876The New Frontier of Functional Genomics: From Chromatin Architecture and Noncoding RNAs to Therapeutic Targets.SLAS Discov2020
32094342RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.Nat Commun2020
29133230Birth, coming of age and death: The intriguing life of long noncoding RNAs.Semin Cell Dev Biol2018
28850106FANTOM5 CAGE profiles of human and mouse samples.Sci Data2017
26477492Discovery and functional analysis of lncRNAs: Methodologies to investigate an uncharacterized transcriptome.Biochim Biophys Acta2016
25505068Characterization of novel transcripts of human papillomavirus type 16 using cap analysis gene expression technology.J Virol2015
26510915CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors.Genome Res2015
24670764A promoter-level mammalian expression atlas.Nature2014
24777452Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance.Nat Genet2014
23102264Structure by sequencing: discovery of hidden messages in the noncoding RNA fraction.Mol Cell2012
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Collaborators

Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 13
Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
Co-authored papers 6
Kosuke Hashimoto
Kwansei Gakuin University
Co-authored papers 6
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Charles Plessy
Okinawa Institute of Science and Technology
Co-authored papers 5
Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
Co-authored papers 5
Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Shuhei Noguchi
RIKEN Center for Integrative Medical Sciences
Co-authored papers 4
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 4
Valerio Orlando
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 4
Jay W Shin
Genome Institute of Singapore (GIS)
Co-authored papers 4
Michihira Tagami
RIKEN Center for Integrative Medical Sciences
Co-authored papers 4
Stefano Gustincich
Istituto Italiano di Tecnologia
Co-authored papers 3
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Alka Saxena
Biomedical Research Centre at Guy's Hospital
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Jessica Severin
Center for Integrative Medical Sciences
Co-authored papers 3
Soichi Kojima
Liver Cancer Prevention Research Unit
Co-authored papers 3
Hiromi Nishiyori
Center for Integrative Medical Sciences
Co-authored papers 3
Boris Lenhard
MRC London Institute of Medical Sciences
Co-authored papers 3
Mitsuyoshi Murata
Center for Integrative Medical Sciences
Co-authored papers 3
Yuki Hasegawa
Shinshu University
Co-authored papers 3
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Juha Kere
Folkhalsan Research Center, University of Helsinki
Co-authored papers 3
Jayson Harshbarger
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Yulia A Medvedeva
Research Center of Biotechnology RAS, Russian Academy of Sciences
Co-authored papers 3
Marina Lizio
Cerevance Ltd
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Yuri Ishizu
RIKEN Center for Life Science Technologies
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Akira Hasegawa
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Hideya Kawaji
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