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Author Details

Bum-Kyu Lee
Cancer Research Center, University at Albany, State University of New York
2010
46
23
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37267513Limited plasticity of monocyte fate and function associated with epigenetic scripting at the level of progenitors.Blood2023
37584502Brd activity regulates Müller glia-dependent retinal regeneration in zebrafish.Glia2023
36951126Super-enhancer-associated transcription factors collaboratively regulate trophoblast-active gene expression programs in human trophoblast stem cells.Nucleic Acids Res2023
34751735Neutrophil DREAM promotes neutrophil recruitment in vascular inflammation.J Exp Med2022
35537047Induction of human trophoblast stem-like cells from primed pluripotent stem cells.Proc Natl Acad Sci U S A2022
36207293A MYC-ZNF148-ID1/3 regulatory axis modulating cancer stem cell traits in aggressive breast cancer.Oncogenesis2022
35241136Meiosis-specific cohesin complexes display essential and distinct roles in mitotic embryonic stem cell chromosomes.Genome Biol2022
34150768Integrating High-Throughput Approaches and <i>in vitro</i> Human Trophoblast Models to Decipher Mechanisms Underlying Early Human Placenta Development.Front Cell Dev Biol2021
33483713Mechanobiological conditioning of mesenchymal stem cells for enhanced vascular regeneration.Nat Biomed Eng2021
33772001The oncogene AAMDC links PI3K-AKT-mTOR signaling with metabolic reprograming in estrogen receptor-positive breast cancer.Nat Commun2021
31628347Super-enhancer-guided mapping of regulatory networks controlling mouse trophoblast stem cells.Nat Commun2019
29272857Fosl1 overexpression directly activates trophoblast-specific gene expression programs in embryonic stem cells.Stem Cell Res2018
30561326Yap1 safeguards mouse embryonic stem cells from excessive apoptosis during differentiation.Elife2018
30504895miRNA-mediated TUSC3 deficiency enhances UPR and ERAD to promote metastatic potential of NSCLC.Nat Commun2018
29529258Implications of CpG islands on chromosomal architectures and modes of global gene regulation.Nucleic Acids Res2018
29038163Corrected and Republished from: BCL11A Is a Critical Component of a Transcriptional Network That Activates RAG Expression and V(D)J Recombination.Mol Cell Biol2017
31080945Arid3a regulates mesoderm differentiation in mouse embryonic stem cells.J Stem Cell Ther Transplant2017
28453857Fbxl19 recruitment to CpG islands is required for Rnf20-mediated H2B mono-ubiquitination.Nucleic Acids Res2017
29030471Retraction for Lee et al., "The BCL11A Transcription Factor Directly Activates RAG Gene Expression and V(D)J Recombination".Mol Cell Biol2017
28973471Mechanisms of transcription factor-mediated direct reprogramming of mouse embryonic stem cells to trophoblast stem-like cells.Nucleic Acids Res2017
26787899Subtype-specific addiction of the activated B-cell subset of diffuse large B-cell lymphoma to FOXP1.Proc Natl Acad Sci U S A2016
27482822Pathogen Infection and MORC Proteins Affect Chromatin Accessibility of Transposable Elements and Expression of Their Proximal Genes in Arabidopsis.Mol Plant Microbe Interact2016
26917425Yap1 is dispensable for self-renewal but required for proper differentiation of mouse embryonic stem (ES) cells.EMBO Rep2016
25227241Multi-layered global gene regulation in mouse embryonic stem cells.Cell Mol Life Sci2015
26411691Tgif1 Counterbalances the Activity of Core Pluripotency Factors in Mouse Embryonic Stem Cells.Cell Rep2015
26341560Corrigendum: Arid3a is essential to execution of the first cell fate decision via direct embryonic and extraembryonic transcriptional regulation.Genes Dev2015
26080425A set of NF-κB-regulated microRNAs induces acquired TRAIL resistance in lung cancer.Proc Natl Acad Sci U S A2015
25919664Correction: Quantitative genetics of CTCF binding reveal local sequence effects and different modes of X-chromosome association.PLoS Genet2015
24591644Dendritic cell fate is determined by BCL11A.Proc Natl Acad Sci U S A2014
25411781Quantitative genetics of CTCF binding reveal local sequence effects and different modes of X-chromosome association.PLoS Genet2014
25198066Chromatin accessibility mapping identifies mediators of basal transcription and retinoid-induced repression of OTX2 in medulloblastoma.PLoS One2014
25319825Arid3a is essential to execution of the first cell fate decision via direct embryonic and extraembryonic transcriptional regulation.Genes Dev2014
25405324CpG island-mediated global gene regulatory modes in mouse embryonic stem cells.Nat Commun2014
24511468Bright/Arid3A acts as a barrier to somatic cell reprogramming through direct regulation of Oct4, Sox2, and Nanog.Stem Cell Reports2014
23303785A Myc-microRNA network promotes exit from quiescence by suppressing the interferon response and cell-cycle arrest genes.Nucleic Acids Res2013
23690044Development of a chloroplast DNA marker for monitoring of transgene introgression in Brassica napus L.Biotechnol Lett2013
23669349Bcl6a function is required during optic cup formation to prevent p53-dependent apoptosis and colobomata.Hum Mol Genet2013
23438597The BCL11A transcription factor directly activates RAG gene expression and V(D)J recombination.Mol Cell Biol2013
22090374Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells.Genome Res2012
22955617The accessible chromatin landscape of the human genome.Nature2012
22952237Genome-wide studies of CCCTC-binding factor (CTCF) and cohesin provide insight into chromatin structure and regulation.J Biol Chem2012
22761590Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection.PLoS Genet2012
21247883Wide-ranging functions of E2F4 in transcriptional activation and repression revealed by genome-wide analysis.Nucleic Acids Res2011
21750106Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity.Genome Res2011
21106903High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells.Genome Res2011
20299549Heritable individual-specific and allele-specific chromatin signatures in humans.Science2010
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Collaborators

Jonghwan Kim
Co-authored papers 22
Vishwanath R Iyer
Indian Institute of Technology Bombay
Co-authored papers 19
Gregory E Crawford
Center for Genomic & Computational Biology, Duke University
Co-authored papers 9
Lingyun Song
Center for Genomic & Computational Biology, Duke University
Co-authored papers 7
Terrence S Furey
University of North Carolina at Chapel Hill
Co-authored papers 7
Jason D Lieb
The University of Chicago
Co-authored papers 6
Ewan Birney
European Bioinformatics Institute
Co-authored papers 6
Darin London
Co-authored papers 4
Nathan Sheffield (CM4AI)
University of Virginia
Co-authored papers 3
Alan P Boyle
University of Michigan ann arbor
Co-authored papers 3
Damian Keefe
University of Adelaide
Co-authored papers 3
Akshay Bhinge
Co-authored papers 3
Zheng Liu
Chinese Academy of Agricultural Sciences
Co-authored papers 3
Ryan M McDaniell
The Children's Hospital of Philadelphia
Co-authored papers 3
Jeremy M Simon
University of North Carolina
Co-authored papers 2
Matthew Wortham
Pediatric Diabetes Research Center, University of California
Co-authored papers 2
Zhuzhu Zhang
The Salk Institute for Biological Studies
Co-authored papers 2
Ian Dunham
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Yoichiro Shibata
Center for Genomic and Computational Biology, Duke University.
Co-authored papers 2
Louis M Staudt
National Cancer Institute, National Institutes of Health
Co-authored papers 2
Zhancheng Zhang
Co-authored papers 2
Richard Durbin
University of Cambridge
Co-authored papers 2
Stephen C J Parker
University of Michigan ann arbor
Co-authored papers 1
Patrick A Navas
University of Washington
Co-authored papers 1
John A Stamatoyannopoulos
Altius Institute for Biomedical Sciences
Co-authored papers 1
Michael R Erdos
Center for Precision Health Research, National Human Genome Research Institute
Co-authored papers 1
Mario A Morken
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 1
Francis S Collins
University of Michigan ann arbor
Co-authored papers 1
Jeff Vierstra
Altius Institute for Biomedical Sciences
Co-authored papers 1
Alexias Safi
Center for Genomic and Computational Biology, Duke University Medical Center
Co-authored papers 1
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