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Author Details

Aurelien Dugourd
Institute of Experimental Medicine and Systems Biology, RWTH Aachen University
2016
27
13
Kirsten Obernier (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36688815Pan-Cancer landscape of protein activities identifies drivers of signalling dysregulation and patient survival.Mol Syst Biol2023
38000021Mapping cardiac remodeling in chronic kidney disease.Sci Adv2023
36781298Phosphoproteomic analysis of metformin signaling in colorectal cancer cells elucidates mechanism of action and potential therapeutic opportunities.Clin Transl Med2023
35134857FUNKI: interactive functional footprint-based analysis of omics data.Bioinformatics2022
35680885Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data.Nat Commun2022
35550039Reducing lipid bilayer stress by monounsaturated fatty acids protects renal proximal tubules in diabetes.Elife2022
36539415Dynamic partitioning of branched-chain amino acids-derived nitrogen supports renal cancer progression.Nat Commun2022
36605986Pre-analytical processing of plasma and serum samples for combined proteome and metabolome analysis.Front Mol Biosci2022
36699385decoupleR: ensemble of computational methods to infer biological activities from omics data.Bioinform Adv2022
33357446Dynamic 3D proteomes reveal protein functional alterations at high resolution in situ.Cell2021
33682416PHONEMeS: Efficient Modeling of Signaling Networks Derived from Large-Scale Mass Spectrometry Data.J Proteome Res2021
33484195Norepinephrine promotes triglyceride storage in macrophages via beta2-adrenergic receptor activation.FASEB J2021
33774223Macrophage beta2-adrenergic receptor is dispensable for the adipose tissue inflammation and function.Mol Metab2021
34939300COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.Mol Syst Biol2021
34609894Systems approach reveals distinct and shared signaling networks of the four PGE<sub>2</sub> receptors in T cells.Sci Signal2021
34664389COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.Mol Syst Biol2021
34531575SREBP1-induced fatty acid synthesis depletes macrophages antioxidant defences to promote their alternative activation.Nat Metab2021
32516357Converting networks to predictive logic models from perturbation signalling data with CellNOpt.Bioinformatics2020
31819186Kinetic modelling of quantitative proteome data predicts metabolic reprogramming of liver cancer.Br J Cancer2020
32645325The Global Phosphorylation Landscape of SARS-CoV-2 Infection.Cell2020
32726410Increased CXCL4 expression in hematopoietic cells links inflammation and progression of bone marrow fibrosis in MPN.Blood2020
32685770Footprint-based functional analysis of multiomic data.Curr Opin Syst Biol2019
29452638NADH Shuttling Couples Cytosolic Reductive Carboxylation of Glutamine with Glycolysis in Cells with Mitochondrial Dysfunction.Mol Cell2018
30075132Gli1<sup>+</sup> Mesenchymal Stromal Cells Are a Key Driver of Bone Marrow Fibrosis and an Important Cellular Therapeutic Target.Cell Stem Cell2018
28881959MaBoSS 2.0: an environment for stochastic Boolean modeling.Bioinformatics2017
28457748Gli1<sup>+</sup> Mesenchymal Stromal Cells Are a Key Driver of Bone Marrow Fibrosis and an Important Cellular Therapeutic Target.Cell Stem Cell2017
27613445A comprehensive approach to the molecular determinants of lifespan using a Boolean model of geroconversion.Aging Cell2016
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Collaborators

Julio Saez-Rodriguez
Institute of Computational Biomedicine, Heidelberg University
Co-authored papers 24
Emmanuel Barillot
Institut Curie, Universite PSL
Co-authored papers 4
Alberto Valdeolivas
Roche Pharma Research and Early Development
Co-authored papers 4
Laurence Calzone
Institut Curie, Universite PSL
Co-authored papers 4
D??nes T??rei
Heidelberg University
Co-authored papers 3
Aur??lien Naldi
Institut de Biologie de l'Ecole Normale Superieure, Inserm, CNRS, Universite PSL
Co-authored papers 3
Karen Rothfels
Co-authored papers 2
Lincoln Stein
Ontario Institute for Cancer Research, University Avenue
Co-authored papers 2
Marcio Luis Acencio
Norwegian University of Science and Technology
Co-authored papers 2
Hiroaki Kitano
Co-authored papers 2
Anita de Waard
Co-authored papers 2
Alfonso Valencia
Josep Carreras Leukaemia Research Institute (IJC)
Co-authored papers 2
Miguel Vazquez
Norwegian University of Science and Technology
Co-authored papers 2
Alexander R Pico
Institute of Data Science and Biotechnology, Gladstone Institutes
Co-authored papers 2
Enrico Glaab
University of Luxembourg
Co-authored papers 2
Marija Milacic
Co-authored papers 2
Tom C Freeman
The Roslin Institute, University of Edinburgh
Co-authored papers 2
Bertrand De Meulder
European Institute for Systems Biology and Medicine, CNRS-ENS-UCBL-INSERM
Co-authored papers 2
Lisa Matthews
NYU Grossman School of Medicine
Co-authored papers 2
Luana Licata
University of Tor Vergata
Co-authored papers 2
Cristoffer Sevilla
Co-authored papers 2
Augustin Luna
Harvard Medical School
Co-authored papers 2
Ozgun Babur
Houston Methodist Research Institute
Co-authored papers 2
Marc Gillespie
Ontario Institute for Cancer Research
Co-authored papers 2
Reinhard Schneider
Co-authored papers 2
Chris Sander
Broad Institute of MIT and Harvard
Co-authored papers 2
Abel Sousa
Co-authored papers 2
Roger Stephan
Ontario Institute for Cancer Research
Co-authored papers 2
Carole Goble
University of Manchester
Co-authored papers 2
Danish Memon
European Bioinformatics Institute
Co-authored papers 2
Release 1.2