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Author Details

Martin Kuiper
Norwegian University of Science and Technology
1983
86
31
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37992291TFCheckpoint database update, a cross-referencing system for transcription factors from human, mouse and rat.Nucleic Acids Res2024
37992291TFCheckpoint database update, a cross-referencing system for transcription factors from human, mouse and rat.Nucleic Acids Res2024
36369656Halogenated boroxine increases propensity to apoptosis in leukemia (UT-7) but not non-tumor cells in vitro.FEBS Open Bio2023
36369656Halogenated boroxine increases propensity to apoptosis in leukemia (UT-7) but not non-tumor cells in vitro.FEBS Open Bio2023
36648961Characterisation of Colorectal Cancer Cell Lines through Proteomic Profiling of Their Extracellular Vesicles.Proteomes2023
36648961Characterisation of Colorectal Cancer Cell Lines through Proteomic Profiling of Their Extracellular Vesicles.Proteomes2023
35085537Boolean function metrics can assist modelers to check and choose logical rules.J Theor Biol2022
35085537Boolean function metrics can assist modelers to check and choose logical rules.J Theor Biol2022
32313939Setting the basis of best practices and standards for curation and annotation of logical models in biology-highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.Brief Bioinform2021
32313939Setting the basis of best practices and standards for curation and annotation of logical models in biology-highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.Brief Bioinform2021
33547799CausalBuilder: bringing the MI2CAST causal interaction annotation standard to the curator.Database (Oxford)2021
33378765The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling.Brief Bioinform2021
33367853UniBioDicts: Unified access to Biological Dictionaries.Bioinformatics2021
32637990The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST).Bioinformatics2021
34461313Gene Ontology representation for transcription factor functions.Biochim Biophys Acta Gene Regul Mech2021
34673265A GO catalogue of human DNA-binding transcription factors.Biochim Biophys Acta Gene Regul Mech2021
34710644Formalization of gene regulation knowledge using ontologies and gene ontology causal activity models.Biochim Biophys Acta Gene Regul Mech2021
34877506Logical and experimental modeling of cytokine and eicosanoid signaling in psoriatic keratinocytes.iScience2021
33547799CausalBuilder: bringing the MI2CAST causal interaction annotation standard to the curator.Database (Oxford)2021
34877506Logical and experimental modeling of cytokine and eicosanoid signaling in psoriatic keratinocytes.iScience2021
34710644Formalization of gene regulation knowledge using ontologies and gene ontology causal activity models.Biochim Biophys Acta Gene Regul Mech2021
34673265A GO catalogue of human DNA-binding transcription factors.Biochim Biophys Acta Gene Regul Mech2021
34461313Gene Ontology representation for transcription factor functions.Biochim Biophys Acta Gene Regul Mech2021
33378765The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling.Brief Bioinform2021
33367853UniBioDicts: Unified access to Biological Dictionaries.Bioinformatics2021
32637990The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST).Bioinformatics2021
32468194Silencing trust: confidence and familiarity in re-engineering knowledge infrastructures.Med Health Care Philos2020
32468194Silencing trust: confidence and familiarity in re-engineering knowledge infrastructures.Med Health Care Philos2020
32986267Network Building with the Cytoscape BioGateway App Explained in Five Use Cases.Curr Protoc Bioinformatics2020
33195403A Middle-Out Modeling Strategy to Extend a Colon Cancer Logical Model Improves Drug Synergy Predictions in Epithelial-Derived Cancer Cell Lines.Front Mol Biosci2020
32954378Network and Systems Medicine: Position Paper of the European Collaboration on Science and Technology Action on Open Multiscale Systems Medicine.Netw Syst Med2020
32848834Strategies to Enhance Logic Modeling-Based Cell Line-Specific Drug Synergy Prediction.Front Physiol2020
33059599A foundation for reference models for drug combinations with an application to Loewe's reference model.BMC Bioinformatics2020
33059599A foundation for reference models for drug combinations with an application to Loewe's reference model.BMC Bioinformatics2020
33195403A Middle-Out Modeling Strategy to Extend a Colon Cancer Logical Model Improves Drug Synergy Predictions in Epithelial-Derived Cancer Cell Lines.Front Mol Biosci2020
32848834Strategies to Enhance Logic Modeling-Based Cell Line-Specific Drug Synergy Prediction.Front Physiol2020
32986267Network Building with the Cytoscape BioGateway App Explained in Five Use Cases.Curr Protoc Bioinformatics2020
32954378Network and Systems Medicine: Position Paper of the European Collaboration on Science and Technology Action on Open Multiscale Systems Medicine.Netw Syst Med2020
30793173CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination.Bioinformatics2019
31710663The Cytoscape BioGateway App: explorative network building from the BioGateway triple store.Bioinformatics2019
30793173CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination.Bioinformatics2019
31710663The Cytoscape BioGateway App: explorative network building from the BioGateway triple store.Bioinformatics2019
27270715Gene regulation knowledge commons: community action takes care of DNA binding transcription factors.Database (Oxford)2016
27270715Gene regulation knowledge commons: community action takes care of DNA binding transcription factors.Database (Oxford)2016
28149059Genes2GO: A web application for querying gene sets for specific GO terms.Bioinformation2016
28149059Genes2GO: A web application for querying gene sets for specific GO terms.Bioinformation2016
26083830Sequence-Dependent Promoter Escape Efficiency Is Strongly Influenced by Bias for the Pretranslocated State during Initial Transcription.Biochemistry2015
26317215Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling.PLoS Comput Biol2015
26083830Sequence-Dependent Promoter Escape Efficiency Is Strongly Influenced by Bias for the Pretranslocated State during Initial Transcription.Biochemistry2015
26205660The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms.BMC Syst Biol2015
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Collaborators

Astrid Laegreid
Norwegian University of Science and Technology
Co-authored papers 15
Vladimir Mironov
Priorov Central National Institute of Traumatology and Orthopedics
Co-authored papers 12
Steven Vercruysse
Norwegian University of Science and Technology (NTNU)
Co-authored papers 11
Erick Antezana
Norwegian University of Science and Technology
Co-authored papers 9
??smund Flobak
Norwegian University of Science and Technology
Co-authored papers 9
Vasundra Tour??
Norwegian University of Science and Technology (NTNU)
Co-authored papers 8
Steven Maere
Ghent University
Co-authored papers 6
Marcio Luis Acencio
Norwegian University of Science and Technology
Co-authored papers 5
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University College London, Institute for Cardiovascular Science
Co-authored papers 5
Jens Hollunder
Flanders Institute for Biotechnology, Ghent University
Co-authored papers 4
Paul Van Hummelen
Co-authored papers 4
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Co-authored papers 4
Pascale Gaudet
University of Geneva
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European Bioinformatics Institute (EMBL-EBI)
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Paul D Thomas
University of Southern California
Co-authored papers 4
Mikel Ega??a Aranguren
University of Basque Country (UPV/EHU)
Co-authored papers 4
Sandra Orchard
EMBL's European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 4
Denis Thieffry
Institut de Biologie de l'Ecole Normale Superieure, Inserm, CNRS, Universite PSL
Co-authored papers 3
Robert Stevens
The University of Manchester
Co-authored papers 3
Colin Logie
Radboud Institute for Molecular Science, Radboud University
Co-authored papers 3
Yves Moreau
KU Leuven - University of Leuven
Co-authored papers 3
Koen Van Leemput
Technical University of Denmark
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Noemi Del-Toro
European Bioinformatics Institute (EMBL-EBI)
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Claudine Chaouiya
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Miguel Vazquez
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Release 1.2