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Author Details

Robert W Shafer
1985
291
74
PMIDPaper TitleJournal TitlePublished Year
36063397Infectious Diseases Society of America Guidelines on the Treatment and Management of Patients With COVID-19 (September 2022).Clin Infect Dis2024
37112972HIV-1 Group M Capsid Amino Acid Variability: Implications for Sequence Quality Control of Genotypic Resistance Testing.Viruses2023
37766338Treatment Emergent Dolutegravir Resistance Mutations in Individuals Naïve to HIV-1 Integrase Inhibitors: A Rapid Scoping Review.2023
37738247Recommendations on data sharing in HIV drug resistance research.PLoS Med2023
37801004Human immunodeficiency virus 1 5'-leader mutations in plasma viruses before and after the development of reverse transcriptase inhibitor-resistance mutations.2023
36908615Myalgic Encephalomyelitis/Chronic Fatigue Syndrome is common in post-acute sequelae of SARS-CoV-2 infection (PASC): Results from a post-COVID-19 multidisciplinary clinic.2023
36515174Highly Ambiguous HIV-1 Pol Positions Encoding Multiple Amino Acids Usually Result from Antiviral or Immune Selection Pressure.AIDS Res Hum Retroviruses2023
37333388HIV-1 5'-Leader Mutations in Plasma Viruses Before and After the Development of Reverse Transcriptase Inhibitor-Resistance Mutations.2023
36642087Predicted effects of the introduction of long-acting injectable cabotegravir pre-exposure prophylaxis in sub-Saharan Africa: a modelling study.Lancet HIV2023
36750835Potential role of doravirine for the treatment of HIV-1-infected persons with transmitted drug resistance.2023
35325204Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function.Mol Biol Evol2022
363751302022 update of the drug resistance mutations in HIV-1.Top Antivir Med2022
36102816Genotypic Resistance Testing of HIV-1 DNA in Peripheral Blood Mononuclear Cells.Clinical Microbiology Reviews2022
35510849A Partially Multiplexed HIV Drug Resistance (HIVDR) Assay for Monitoring HIVDR Mutations of the Protease, Reverse-Transcriptase (PRRT), and Integrase (INT).Microbiology spectrum2022
35700134Susceptibility of SARS-CoV-2 Omicron Variants to Therapeutic Monoclonal Antibodies: Systematic Review and Meta-analysis.Microbiol Spectr2022
35631067Spectrum of Atazanavir-Selected Protease Inhibitor-Resistance Mutations.Pathogens2022
36334368Sierra SARS-CoV-2 sequence and antiviral resistance analysis program.Journal of Clinical Virology2022
35544100Public availability of HIV-1 drug resistance sequence and treatment data: a systematic review.Lancet Microbe, The2022
36191692Genotypic correlates of resistance to the HIV-1 strand transfer integrase inhibitor cabotegravir.Antiviral Res2022
36680108Insights into HIV-1 Transmission Dynamics Using Routinely Collected Data in the Mid-Atlantic United States.Viruses2022
35075456Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function.bioRxiv2022
35263335Coronavirus Resistance Database (CoV-RDB): SARS-CoV-2 susceptibility to monoclonal antibodies, convalescent plasma, and plasma from vaccinated persons.PLoS ONE2022
35157724Adherence to contemporary antiretroviral treatment regimens and impact on immunological and virologic outcomes in a US healthcare system.PLoS One2022
34535792The biological and clinical significance of emerging SARS-CoV-2 variants.Nature Reviews Genetics2021
34296992SARS-CoV-2 Neutralization Resistance Mutations in Patient with HIV/AIDS, California, USA.Emerging Infectious Diseases2021
34064774Temporal Trends in HIV-1 Mutations Used for the Surveillance of Transmitted Drug Resistance.Viruses2021
33683148Integrase Strand Transfer Inhibitor Resistance in Integrase Strand Transfer Inhibitor-Naive Persons.AIDS Research and Human Retroviruses2021
34319150SARS-CoV-2 Antiviral Therapy.Clinical Microbiology Reviews2021
32974670In vitro cross-resistance to doravirine in a panel of HIV-1 clones harbouring multiple NNRTI resistance mutations.Journal of Antimicrobial Chemotherapy2021
34787497SARS-CoV-2 Variants and Their Relevant Mutational Profiles: Update Summer 2021.Microbiology spectrum2021
33409413A SARS-CoV-2 antiviral therapy score card.2020
31965175Expanded Spectrum of Antiretroviral-Selected Mutations in Human Immunodeficiency Virus Type 2.J Infect Dis2020
31774913Human Immunodeficiency Virus-1 Viral Load Is Elevated in Individuals With Reverse-Transcriptase Mutation M184V/I During Virological Failure of First-Line Antiretroviral Therapy and Is Associated With Compensatory Mutation L74I.Journal of Infectious Diseases2020
31617907Integrase strand transfer inhibitor (INSTI)-resistance mutations for the surveillance of transmitted HIV-1 drug resistance.Journal of Antimicrobial Chemotherapy2020
32102090Analysis of unusual and signature APOBEC-mutations in HIV-1 pol next-generation sequences.PLoS One2020
32490370Cost-effectiveness analysis of pre-ART HIV drug resistance testing in Kenyan women.EClinicalMedicine2020
32936523HIV-1 transmitted drug resistance surveillance: shifting trends in study design and prevalence estimates.J Int AIDS Soc2020
33143751Predictors of first-line antiretroviral therapy failure among adults and adolescents living with HIV/AIDS in a large prevention and treatment program in Nigeria.AIDS Research and Therapy2020
32916958Coronavirus Antiviral Research Database (CoV-RDB): An Online Database Designed to Facilitate Comparisons between Candidate Anti-Coronavirus Compounds.Viruses2020
32575676Dry Panels Supporting External Quality Assessment Programs for Next Generation Sequencing-Based HIV Drug Resistance Testing.Viruses2020
32516949Next-Generation Sequencing for HIV Drug Resistance Testing: Laboratory, Clinical, and Implementation Considerations.Viruses2020
32904894Virological Failure and Acquired Genotypic Resistance Associated With Contemporary Antiretroviral Treatment Regimens.Open Forum Infect Dis2020
31317771Amino Acid Prevalence of HIV-1 Mutations by Direct Polymerase Chain Reaction and Single Genome Sequencing.AIDS Research and Human Retroviruses2019
316348622019 update of the drug resistance mutations in HIV-1.Top Antivir Med2019
30430843Moderate-to-High Levels of Pretreatment HIV Drug Resistance in KwaZulu-Natal Province, South Africa.AIDS Research and Human Retroviruses2019
30052811Human Immunodeficiency Virus Drug Resistance: 2018 Recommendations of the International Antiviral Society-USA Panel.Clin Infect Dis2019
30520997Reply to Ambrosioni et al.Clin Infect Dis2019
30321316The Clinical Implications of Pretreatment Drug Resistance-A Moving Target.Clinical Infectious Diseases2019
29846534Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted Human Immunodeficiency Virus Type 1 Drug Resistance in a Large US Clinic Population.Clin Infect Dis2019
31143879Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence Analysis.eClinicalMedicine2019
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