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Author Details

Shoba Ranganathan
Macquarie University
1972
173
35
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36674563Metaproteomic Analysis of an Oral Squamous Cell Carcinoma Dataset Suggests Diagnostic Potential of the Mycobiome.Int J Mol Sci2023
37886713Christian Schönbach 1965-2023.Bioinform Adv2023
37813936Preclinical 3D-model supports an invisibility cloak for adenoid cystic carcinoma.Sci Rep2023
36765809Head and Neck Cancer Immunotherapy: Molecular Biological Aspects of Preclinical and Clinical Research.Cancers (Basel)2023
34601153Leveraging homologies for cross-species plasma proteomics in ungulates using data-independent acquisition.J Proteomics2022
35862176Bioinformatic Analysis to Investigate Metaproteome Composition Using Trans-Proteomic Pipeline.Curr Protoc2022
35620463Editorial: Bioinformatics and the Translation of Data-Driven Discoveries.Front Genet2022
35163485Proliferation and Apoptosis Pathways and Factors in Oral Squamous Cell Carcinoma.Int J Mol Sci2022
32047889Mass spectrometry-based protein identification in proteomics-a review.Brief Bioinform2021
33898512BIO-GATS: A Tool for Automated GPCR Template Selection Through a Biophysical Approach for Homology Modeling.Front Mol Biosci2021
34489527Author Correction: Enhancing protein backbone angle prediction by using simpler models of deep neural networks.Sci Rep2021
34768977Machine Learning Assisted Approach for Finding Novel High Activity Agonists of Human Ectopic Olfactory Receptors.Int J Mol Sci2021
34445392Bacterial Antigens Reduced the Inhibition Effect of Capsaicin on Cal 27 Oral Cancer Cell Proliferation.Int J Mol Sci2021
34830441ML218 HCl Is More Efficient Than Capsaicin in Inhibiting Bacterial Antigen-Induced Cal 27 Oral Cancer Cell Proliferation.Int J Mol Sci2021
32478466iSwathX 2.0 for Processing DDA Spectral Libraries for DIA Data Analysis.Curr Protoc Bioinformatics2020
34235481A two-stage computational approach to predict novel ligands for a chemosensory receptor.Curr Res Struct Biol2020
33173130Enhancing protein backbone angle prediction by using simpler models of deep neural networks.Sci Rep2020
30717648Diverse dynamics features of novel protein kinase C (PKC) isozymes determine the selectivity of a fluorinated balanol analogue for PKCε.BMC Bioinformatics2019
31856726Prediction of novel mouse TLR9 agonists using a random forest approach.BMC Mol Cell Biol2019
30052774iSwathX: an interactive web-based application for extension of DIA peptide reference libraries.Bioinformatics2019
31186128Bioinformatics approaches for improving seminal plasma proteome analysis.Theriogenology2019
31174013Structural bioinformatics analysis of variants on GPCR function.Curr Opin Struct Biol2019
31405513Editorial overview: Theory and simulation: demystifying GPCRs - structure, function and drug design.Curr Opin Struct Biol2019
31005679Applications of machine learning in GPCR bioactive ligand discovery.Curr Opin Struct Biol2019
30999857APBioNet's annual International Conference on Bioinformatics (InCoB) returns to India in 2018.BMC Genomics2019
29341608Molecular Dynamics Pinpoint the Global Fluorine Effect in Balanoid Binding to PKCε and PKA.J Chem Inf Model2018
30150761Role of solvent accessibility for aggregation-prone patches in protein folding.Sci Rep2018
30577541Clinically Relevant Post-Translational Modification Analyses-Maturing Workflows and Bioinformatics Tools.Int J Mol Sci2018
30560923PhoglyStruct: Prediction of phosphoglycerylated lysine residues using structural properties of amino acids.Sci Rep2018
29363432A bioinformatics potpourri.BMC Genomics2018
29764421Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses.BMC Genomics2018
27975288De Novo Peptide Sequencing: Deep Mining of High-Resolution Mass Spectrometry Data.Methods Mol Biol2017
28119986Divergent response of homologous ATP sites to stereospecific ligand fluorination for selectivity enhancement.Org Biomol Chem2017
28117396Accelerating the search for the missing proteins in the human proteome.Nat Commun2017
29297286Exploration of charge states of balanol analogues acting as ATP-competitive inhibitors in kinases.BMC Bioinformatics2017
28895742Human Prestin: A Candidate PE1 Protein Lacking Stringent Mass Spectrometric Evidence?J Proteome Res2017
28818468Prediction of interface residue based on the features of residue interaction network.J Theor Biol2017
27975291A Systematic Bioinformatics Approach to Identify High Quality Mass Spectrometry Data and Functionally Annotate Proteins and Proteomes.Methods Mol Biol2017
26680015Systems Proteomics View of the Endogenous Human Claudin Protein Family.J Proteome Res2016
28155668Bioinformatics and systems biology research update from the 15<sup>th</sup> International Conference on Bioinformatics (InCoB2016).BMC Bioinformatics2016
281556562016 update on APBioNet's annual international conference on bioinformatics (InCoB).BMC Genomics2016
26026709Cracking the nodule worm code advances knowledge of parasite biology and biotechnology to tackle major diseases of livestock.Biotechnol Adv2015
28102114GIW and InCoB are advancing bioinformatics in the Asia-Pacific.BMC Bioinformatics2015
26542445Introduction to selected papers from GIW/InCoB 2015.J Bioinform Comput Biol2015
26679412GIW and InCoB, two premier bioinformatics conferences in Asia with a combined 40 years of history.BMC Genomics2015
26679043Discrete structural features among interface residue-level classes.BMC Bioinformatics2015
26131659Linking structural features of protein complexes and biological function.Protein Sci2015
26076068Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project.J Proteome Res2015
25987887A novel multiplexed immunoassay identifies CEA, IL-8 and prolactin as prospective markers for Dukes' stages A-D colorectal cancers.Clin Proteomics2015
26029726Coherence analysis discriminates between retroviral integration patterns in CD34(+) cells transduced under differing clinical trial conditions.Mol Ther Methods Clin Dev2015
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Collaborators

Christian Schönbach
Co-authored papers 18
Mark S Baker
Macquarie University
Co-authored papers 14
Paul W Sternberg
California Institute of Technology
Co-authored papers 8
Seong Beom Ahn
Macquarie Medical School, Macquarie University
Co-authored papers 7
Vladimir Brusic
Co-authored papers 7
Fei Liu
Macquarie University
Co-authored papers 6
Edouard C Nice
Monash University
Co-authored papers 4
Janet Kelso
Co-authored papers 4
William S Hancock
Northeastern University
Co-authored papers 3
Chris F Taylor
European Molecular Biology Laboratory- European Bioinformatics Institute
Co-authored papers 3
Patricia L Whetzel
University of Colorado Anschutz Medical Campus
Co-authored papers 3
Pascale Gaudet
University of Geneva
Co-authored papers 3
Sandra Orchard
EMBL's European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Susanna-Assunta Sansone
Oxford e-Research Centre, University of Oxford
Co-authored papers 3
Philippe Rocca-Serra
University of Oxford
Co-authored papers 3
Dawn Field
Biodiversity Institute, University of Oxford
Co-authored papers 3
Kaylene J Simpson
The University of Melbourne, Peter MacCallum Cancer Centre
Co-authored papers 2
Carol J Bult
The Jackson Laboratory Cancer Center
Co-authored papers 2
Paul N Schofield
University of Cambridge
Co-authored papers 2
J Michael Cherry
Stanford University
Co-authored papers 2
Guy Cochrane
European Bioinformatics Institute
Co-authored papers 2
Takashi Gojobori
Co-authored papers 2
Damian Smedley
William Harvey Research Institute, Queen Mary University of London
Co-authored papers 2
Jan Aerts
Co-authored papers 2
Steven Y He
Macquarie University
Co-authored papers 2
Teresa K Attwood
Co-authored papers 2
Burkhard Rost
Technical University of Munich (TUM)
Co-authored papers 2
Carole Goble
University of Manchester
Co-authored papers 2
Robert Gentleman
Center for Computational Biomedicine, Harvard Medical School
Co-authored papers 2
Lorna Richardson
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Release 1.2