Author details

Full Name

Hong-Jie Dai

Affiliation

ORCID

Career Start Year

2006

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36734300	Automatic Extraction of Medication Mentions from Tweets-Overview of the BioCreative VII Shared Task 3 Competition.	Database (Oxford)	2023
36710066	Augmenting DSM-5 diagnostic criteria with self-attention-based BiLSTM models for psychiatric diagnosis.		2023
35673092	Protected Health Information Recognition of Unstructured Code-Mixed Electronic Health Records in Taiwan.		2022
31334805	Adverse drug event and medication extraction in electronic health records via a cascading architecture with different sequence labeling models and word embeddings.	Journal of the American Medical Informatics Association : JAMIA	2020
32360937	Cohort selection for clinical trials using multiple instance learning.	J Biomed Inform	2020
33584354	Deep Learning-Based Natural Language Processing for Screening Psychiatric Patients.	Frontiers in Psychiatry	2020
33258777	Family History Information Extraction With Neural Attention and an Enhanced Relation-Side Scheme: Algorithm Development and Validation.	JMIR Med Inform	2020
31541973	Using text mining to extract depressive symptoms and to validate the diagnosis of major depressive disorder from electronic health records.	Journal of Affective Disorders	2020
31445246	Classifying adverse drug reactions from imbalanced twitter data.	International Journal of Medical Informatics	2019
31881965	Family member information extraction via neural sequence labeling models with different tag schemes.	BMC Medical Informatics and Decision Making	2019
30809637	Statistical principle-based approach for recognizing and normalizing microRNAs described in scientific literature.	Database (Oxford)	2019
30689846	Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine.	Database (Oxford)	2019
30325934	Assessing the severity of positive valence symptoms in initial psychiatric evaluation records: Should we use convolutional neural networks?	PLoS One	2018
29873706	SPRENO: a BioC module for identifying organism terms in figure captions.	Database : the journal of biological databases and curation	2018
28822857	Exploring associations of clinical and social parameters with violent behaviors among psychiatric patients.	J Biomed Inform	2017
31725857	Biomarker identification of hepatocellular carcinoma using a methodical literature mining strategy.	Database (Oxford)	2017
27589961	Overview of the interactive task in BioCreative V.	Database (Oxford)	2016
27242035	MET network in PubMed: a text-mined network visualization and curation system.	Database (Oxford)	2016
27465130	NTTMUNSW BioC modules for recognizing and normalizing species and gene/protein mentions.	Database (Oxford)	2016
27504009	Improving the dictionary lookup approach for disease normalization using enhanced dictionary and query expansion.	Database (Oxford)	2016
27589962	BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.	Database (Oxford)	2016
26380272	Text Mining for Translational Bioinformatics.	Biomed Res Int	2015
25810773	The CHEMDNER corpus of chemicals and drugs and its annotation principles.	J Cheminform	2015
25810771	Enhancing of chemical compound and drug name recognition using representative tag scheme and fine-grained tokenization.	Journal of Cheminformatics	2015
26319542	Coronary artery disease risk assessment from unstructured electronic health records using text mining.	J Biomed Inform	2015
26432355	A context-aware approach for progression tracking of medical concepts in electronic medical records.	J Biomed Inform	2015
26380302	Recognition and Evaluation of Clinical Section Headings in Clinical Documents Using Token-Based Formulation with Conditional Random Fields.	Biomed Res Int	2015
26380290	Identification and Progression of Heart Disease Risk Factors in Diabetic Patients from Longitudinal Electronic Health Records.	Biomed Res Int	2015
25157073	Overview of the gene ontology task at BioCreative IV.	Database (Oxford)	2014
24980129	BioC interoperability track overview.	Database (Oxford)	2014
25168057	LiverCancerMarkerRIF: a liver cancer biomarker interactive curation system combining text mining and expert annotations.	Database (Oxford)	2014
23406793	T-HOD: a literature-based candidate gene database for hypertension, obesity and diabetes.	Database (Oxford)	2013
24060600	TEMPTING system: a hybrid method of rule and machine learning for temporal relation extraction in patient discharge summaries.	J Biomed Inform	2013
24282506	Collective instance-level gene normalization on the IGN corpus.	PLoS ONE	2013
22556185	Coreference resolution of medical concepts in discharge summaries by exploiting contextual information.	J Am Med Inform Assoc	2012
21685052	Integration of gene normalization stages and co-reference resolution using a Markov logic network.	Bioinformatics	2011
22168213	MeInfoText 2.0: gene methylation and cancer relation extraction from biomedical literature.	BMC Bioinformatics	2011
22151901	The gene normalization task in BioCreative III.	BMC Bioinformatics	2011
20479501	Multistage gene normalization and SVM-based ranking for protein interactor extraction in full-text articles.	IEEE/ACM Transactions on Computational Biology and Bioinformatics	2010
19958519	HypertenGene: extracting key hypertension genes from biomedical literature with position and automatically-generated template features.	BMC Bioinformatics	2009
19654114	PubMed-EX: a web browser extension to enhance PubMed search with text mining features.		2009
18315856	Exploiting likely-positive and unlabeled data to improve the identification of protein-protein interaction articles.	BMC Bioinformatics	2008
19091017	Semi-automatic conversion of BioProp semantic annotation to PASBio annotation.	BMC Bioinformatics	2008
18834493	Overview of BioCreative II gene mention recognition.	Genome Biol	2008
18515840	BIOSMILE web search: a web application for annotating biomedical entities and relations.	Nucleic Acids Res	2008
17764570	BIOSMILE: a semantic role labeling system for biomedical verbs using a maximum-entropy model with automatically generated template features.	BMC Bioinformatics	2007
17254295	NERBio: using selected word conjunctions, term normalization, and global patterns to improve biomedical named entity recognition.	BMC Bioinformatics	2006