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Author Details

Steven M Blue
University of California San Diego
2016
20
14
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36321651RBP Image Database: A resource for the systematic characterization of the subcellular distribution properties of human RNA binding proteins.Nucleic Acids Res2023
37808757Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies.bioRxiv2023
36864190Remodeling oncogenic transcriptomes by small molecules targeting NONO.Nat Chem Biol2023
36759613Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death.Nat Commun2023
35322209Transcriptome-wide identification of RNA-binding protein binding sites using seCLIP-seq.Nat Protoc2022
32929188The sustained expression of Cas9 targeting toxic RNAs reverses disease phenotypes in mouse models of myotonic dystrophy type 1.Nat Biomed Eng2021
33852893Loss of LUC7L2 and U1 snRNP subunits shifts energy metabolism from glycolysis to OXPHOS.Mol Cell2021
34819669A multi-scale map of cell structure fusing protein images and interactions.Nature2021
34732726Gain-of-function cardiomyopathic mutations in RBM20 rewire splicing regulation and re-distribute ribonucleoprotein granules within processing bodies.Nat Commun2021
34485935fSHAPE, fSHAPE-eCLIP, and SHAPE-eCLIP probe transcript regions that interact with specific proteins.STAR Protoc2021
33402748Author Correction: A large-scale binding and functional map of human RNA-binding proteins.Nature2021
32252787Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.Genome Biol2020
34109316An in vivo genome-wide CRISPR screen identifies the RNA-binding protein Staufen2 as a key regulator of myeloid leukemia.Nat Cancer2020
33242392Footprinting SHAPE-eCLIP Reveals Transcriptome-wide Hydrogen Bonds at RNA-Protein Interfaces.Mol Cell2020
28003131CRISPR/Cas9-mediated integration enables TAG-eCLIP of endogenously tagged RNA binding proteins.Methods2017
29230720Erratum to: Robust, Cost-Effective Profiling of RNA Binding Protein Targets with Single-end Enhanced Crosslinking and Immunoprecipitation (seCLIP).Methods Mol Biol2017
28803727Elimination of Toxic Microsatellite Repeat Expansion RNA by RNA-Targeting Cas9.Cell2017
28766298Robust, Cost-Effective Profiling of RNA Binding Protein Targets with Single-end Enhanced Crosslinking and Immunoprecipitation (seCLIP).Methods Mol Biol2017
26990993Resources for the Comprehensive Discovery of Functional RNA Elements.Mol Cell2016
27018577Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP).Nat Methods2016
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Collaborators

Gene W Yeo
University of California
Co-authored papers 20
Eric L Van Nostrand
University of California
Co-authored papers 11
Brenton R Graveley
Co-authored papers 4
Xiang-Dong Fu
Co-authored papers 3
Stefan Aigner
University of California San Diego
Co-authored papers 3
Eric Lécuyer
Co-authored papers 3
Xintao Wei
Co-authored papers 3
Christopher B Burge
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Center for Personal Dynamic Regulomes, Stanford University
Co-authored papers 2
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Boston Children's Hospital
Co-authored papers 2
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Harvard Medical School
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Center for Computational Biology & Bioinformatics (CCBB), University of California
Co-authored papers 1
Annie Truong
Gladstone Institutes
Co-authored papers 1
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Universite libre de Bruxelles (ULB)
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Jisoo Park
University of California San Diego san francisco
Co-authored papers 1
David A Rizzieri
Duke University Medical Center
Co-authored papers 1
Bruce R Conklin
Gladstone Institutes
Co-authored papers 1
Eurie L Hong
Stanford University School of Medicine
Co-authored papers 1
John Lee
University of California San Diego
Co-authored papers 1
Michael Chen
University of California San Diego
Co-authored papers 1
Tian Zhang
Harvard Medical School
Co-authored papers 1
Yuichiro Miyaoka
Tokyo Metropolitan Institute of Medical Science, Japan Gladstone Institutes
Co-authored papers 1
Katherine Licon
University of California San Diego
Co-authored papers 1
Emily C Wheeler
University of California
Co-authored papers 1
Denis L J Lafontaine
Universite libre de Bruxelles (ULB)
Co-authored papers 1
Maya L Gosztyla
University of California San Diego
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Release 1.2