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Author Details

Michael L Stitzel
Institute for Systems Genomics
2001
45
23
PMIDPaper TitleJournal TitlePublished Year
37146281"FunDNAmethyl" Mechanism for Developmental Restriction of a β-Cell Subpopulation.Diabetes2023
37603758Modeling islet enhancers using deep learning identifies candidate causal variants at loci associated with T2D and glycemic traits.Proc Natl Acad Sci U S A2023
37217254Variation in histone configurations correlates with gene expression across nine inbred strains of mice.Genome Res2023
37146281"FunDNAmethyl" Mechanism for Developmental Restriction of a β-Cell Subpopulation.Diabetes2023
37603758Modeling islet enhancers using deep learning identifies candidate causal variants at loci associated with T2D and glycemic traits.Proc Natl Acad Sci U S A2023
37217254Variation in histone configurations correlates with gene expression across nine inbred strains of mice.Genome Res2023
34326544Direct characterization of cis-regulatory elements and functional dissection of complex genetic associations using HCR-FlowFISH.Nat Genet2021
33849996A Transcription Start Site Map in Human Pancreatic Islets Reveals Functional Regulatory Signatures.Diabetes2021
33575647A new graph-based clustering method with application to single-cell RNA-seq data from human pancreatic islets.NAR Genom Bioinform2021
34326544Direct characterization of cis-regulatory elements and functional dissection of complex genetic associations using HCR-FlowFISH.Nat Genet2021
33815388Single Cell Analysis of Blood Mononuclear Cells Stimulated Through Either LPS or Anti-CD3 and Anti-CD28.Front Immunol2021
34465366AMULET: a novel read count-based method for effective multiplet detection from single nucleus ATAC-seq data.Genome Biol2021
34898596CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data.PLoS Comput Biol2021
34497403Author Correction: Direct characterization of cis-regulatory elements and functional dissection of complex genetic associations using HCR-FlowFISH.Nat Genet2021
34475398Functional characterization of T2D-associated SNP effects on baseline and ER stress-responsive β cell transcriptional activation.Nat Commun2021
34417463Tet2 Controls the Responses of β cells to Inflammation in Autoimmune Diabetes.Nat Commun2021
33575647A new graph-based clustering method with application to single-cell RNA-seq data from human pancreatic islets.NAR Genom Bioinform2021
33849996A Transcription Start Site Map in Human Pancreatic Islets Reveals Functional Regulatory Signatures.Diabetes2021
33815388Single Cell Analysis of Blood Mononuclear Cells Stimulated Through Either LPS or Anti-CD3 and Anti-CD28.Front Immunol2021
34898596CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data.PLoS Comput Biol2021
34497403Author Correction: Direct characterization of cis-regulatory elements and functional dissection of complex genetic associations using HCR-FlowFISH.Nat Genet2021
34465366AMULET: a novel read count-based method for effective multiplet detection from single nucleus ATAC-seq data.Genome Biol2021
34417463Tet2 Controls the Responses of β cells to Inflammation in Autoimmune Diabetes.Nat Commun2021
34475398Functional characterization of T2D-associated SNP effects on baseline and ER stress-responsive β cell transcriptional activation.Nat Commun2021
32999275Genetic variant effects on gene expression in human pancreatic islets and their implications for T2D.Nat Commun2020
31999535From GWAS Association to Function: Candidate Gene Screening Within Insulin Resistance-Associated Genomic Loci Using a Preadipocyte Differentiation Model.Circ Res2020
32999275Genetic variant effects on gene expression in human pancreatic islets and their implications for T2D.Nat Commun2020
31999535From GWAS Association to Function: Candidate Gene Screening Within Insulin Resistance-Associated Genomic Loci Using a Preadipocyte Differentiation Model.Circ Res2020
30593493Cell Specificity of Human Regulatory Annotations and Their Genetic Effects on Gene Expression.Genetics2019
30593493Cell Specificity of Human Regulatory Annotations and Their Genetic Effects on Gene Expression.Genetics2019
30428075BiFET: sequencing Bias-free transcription factor Footprint Enrichment Test.Nucleic Acids Res2019
30650367Multiomic Profiling Identifies cis-Regulatory Networks Underlying Human Pancreatic β Cell Identity and Function.Cell Rep2019
31500827(Epi)genomic heterogeneity of pancreatic islet function and failure in type 2 diabetes.Mol Metab2019
31500827(Epi)genomic heterogeneity of pancreatic islet function and failure in type 2 diabetes.Mol Metab2019
30428075BiFET: sequencing Bias-free transcription factor Footprint Enrichment Test.Nucleic Acids Res2019
30650367Multiomic Profiling Identifies cis-Regulatory Networks Underlying Human Pancreatic β Cell Identity and Function.Cell Rep2019
29625024A Common Type 2 Diabetes Risk Variant Potentiates Activity of an Evolutionarily Conserved Islet Stretch Enhancer and Increases C2CD4A and C2CD4B Expression.Am J Hum Genet2018
30375457A neural network based model effectively predicts enhancers from clinical ATAC-seq samples.Sci Rep2018
30181159Type 2 Diabetes-Associated Genetic Variants Regulate Chromatin Accessibility in Human Islets.Diabetes2018
29625024A Common Type 2 Diabetes Risk Variant Potentiates Activity of an Evolutionarily Conserved Islet Stretch Enhancer and Increases C2CD4A and C2CD4B Expression.Am J Hum Genet2018
29688282Two-phase differential expression analysis for single cell RNA-seq.Bioinformatics2018
29360107Erratum: Sequence data and association statistics from 12,940 type 2 diabetes cases and controls.Sci Data2018
30181159Type 2 Diabetes-Associated Genetic Variants Regulate Chromatin Accessibility in Human Islets.Diabetes2018
30375457A neural network based model effectively predicts enhancers from clinical ATAC-seq samples.Sci Rep2018
29360107Erratum: Sequence data and association statistics from 12,940 type 2 diabetes cases and controls.Sci Data2018
29688282Two-phase differential expression analysis for single cell RNA-seq.Bioinformatics2018
27864352Single-cell transcriptomes identify human islet cell signatures and reveal cell-type-specific expression changes in type 2 diabetes.Genome Res2017
28904110The chromatin accessibility signature of human immune aging stems from CD8<sup>+</sup> T cells.J Exp Med2017
28684635A Type 2 Diabetes-Associated Functional Regulatory Variant in a Pancreatic Islet Enhancer at the <i>ADCY5</i> Locus.Diabetes2017
28931935Alpha TC1 and Beta-TC-6 genomic profiling uncovers both shared and distinct transcriptional regulatory features with their primary islet counterparts.Sci Rep2017
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Collaborators

Francis S Collins
University of Michigan ann arbor
Co-authored papers 15
Stephen C J Parker
University of Michigan ann arbor
Co-authored papers 13
Narisu Narisu
Co-authored papers 10
Michael Boehnke
Co-authored papers 10
Michael R Erdos
Center for Precision Health Research, National Human Genome Research Institute
Co-authored papers 8
Ryan P Welch
Co-authored papers 8
Peter S Chines
Co-authored papers 8
Karen L Mohlke
Co-authored papers 8
Laura J Scott
Co-authored papers 7
Markku Laakso
Co-authored papers 7
Johanna Kuusisto
Co-authored papers 6
Jeroen R Huyghe
Co-authored papers 6
Lori L Bonnycastle
Co-authored papers 6
Christian Fuchsberger
Co-authored papers 5
Amy J Swift
Co-authored papers 5
Ryan Tewhey
University of Maine
Co-authored papers 4
Timothy M Frayling
Co-authored papers 4
Anna L Gloyn
Co-authored papers 4
Martijn van de Bunt
Co-authored papers 4
Anne U Jackson
Co-authored papers 4
Anubha Mahajan
Co-authored papers 4
Richard M Watanabe
Co-authored papers 4
Leif Groop
Co-authored papers 4
João Fadista
Co-authored papers 4
John Danesh
Co-authored papers 3
Heather M Highland
Co-authored papers 3
Gabriela L Surdulescu
Co-authored papers 3
Joon Yoon
Co-authored papers 3
Jason Flannick
Co-authored papers 3
Mark A DePristo
Co-authored papers 3
Release 1.2