Author details

Full Name

Golnaz Vahedi

Affiliation

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37292952	Dynamic enhancer interactome promotes senescence and aging.	bioRxiv	2023
36050414	Multiscale 3D genome organization underlies ILC2 ontogenesis and allergic airway inflammation.	Nature Immunology	2023
36712052	AnnoSpat annotates cell types and quantifies cellular arrangements from spatial proteomics.	bioRxiv	2023
36711819	Computational workflow and interactive analysis of single-cell expression profiling of islets generated by the Human Pancreas Analysis Program.	bioRxiv	2023
36947825	Systems Approaches for Studying Immunity.		2023
37263273	Quantitative control of Ets1 dosage by a multi-enhancer hub promotes Th1 cell differentiation and protects from allergic inflammation.		2023
37188822	Single-cell expression profiling of islets generated by the Human Pancreas Analysis Program.	Nat Metab	2023
37438531	High-throughput Oligopaint screen identifies druggable 3D genome regulators.		2023
35332165	Stripenn detects architectural stripes from chromatin conformation data using computer vision.	Nature Communications	2022
35642629	Î± Cell dysfunction in islets from nondiabetic, glutamic acid decarboxylase autoantibody-positive individuals.	J Clin Invest	2022
35508135	Topologically associating domains are disrupted by evolutionary genome rearrangements forming species-specific enhancer connections in mice and humans.	Cell Reports	2022
35726060	TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors.	Nature Immunology	2022
34588688	Author Correction: Epigenetic scarring of exhausted T cells hinders memory differentiation upon eliminating chronic antigenic stimulation.	Nature Immunology	2021
33452686	Remodeling the chromatin landscape in T lymphocytes by a division of labor among transcription factors.	Immunological Reviews	2021
34312545	Epigenetic scarring of exhausted T cells hinders memory differentiation upon eliminating chronic antigenic stimulation.	Nature Immunology	2021
33432171	Exome-wide evaluation of rare coding variants using electronic health records identifies new gene-phenotype associations.	Nat Med	2021
34396987	BET bromodomain protein inhibition reverses chimeric antigen receptor extinction and reinvigorates exhausted T cells in chronic lymphocytic leukemia.	J Clin Invest	2021
34725478	Publisher Correction: BRD4 orchestrates genome folding to promote neural crest differentiation.	Nat Genet	2021
34611363	BRD4 orchestrates genome folding to promote neural crest differentiation.	Nat Genet	2021
34772620	Transcription factors combine to paint the methylation landscape.	Trends in Immunology	2021
34372764	Predisposing factors of long-term responsiveness in a cardio-metabolic cohort: Tehran Lipid and Glucose Study.	BMC Medical Research Methodology	2021
33106804	SARS-CoV-2 Cell Entry Factors ACE2 and TMPRSS2 are Expressed in the Pancreas but are Not Enriched in Islet Endocrine Cells.	bioRxiv	2020
32123397	TooManyCells identifies and visualizes relationships of single-cell clades.	Nature Methods	2020
32049053	Genetic Variation in Type 1 Diabetes Reconfigures the 3D Chromatin Organization of T Cells and Alters Gene Expression.	Immunity	2020
32094195	Joint profiling of chromatin accessibility and CAR-T integration site analysis at population and single-cell levels.	Proceedings of the National Academy of Sciences of the United States of America	2020
32548070	Response Comment on "Validity and Reliability of the Iranian Version of the Short Form Social Well Being Scale in a General Urban Population".	Iranian Journal of Public Health	2020
33207245	SARS-CoV-2 Cell Entry Factors ACE2 and TMPRSS2 Are Expressed in the Microvasculature and Ducts of Human Pancreas but Are Not Enriched in Î² Cells.	Cell Metab	2020
33207211	Foxp3 Re-distributes Its Heavy Lifting.	Immunity	2020
33288806	Trends of low physical activity among Iranian adolescents across urban and rural areas during 2006-2011.	Scientific Reports	2020
30987682	Correction to: National trends of pre-hypertension and hypertension among Iranian adolescents across urban and rural areas (2007-2011).	Biology of Sex Differences	2019
32292731	Validity and Reliability of the Iranian Version of the Short Form Social Well Being Scale in a General Urban Population.	Iranian Journal of Public Health	2019
31606264	TCF-1-Centered Transcriptional Network Drives an Effector versus Exhausted CD8Â T Cell-Fate Decision.	Immunity	2019
31541121	A mass spectrometry-based assay using metabolic labeling to rapidly monitor chromatin accessibility of modified histone proteins.	Sci Rep	2019
30922399	National trends of pre-hypertension and hypertension among Iranian adolescents across urban and rural areas (2007-2011).	Biology of Sex Differences	2019
30745086	Oncogenic Notch Promotes Long-Range Regulatory Interactions within Hyperconnected 3D Cliques.	Mol Cell	2019
31422869	A Thpok-Directed Transcriptional Circuitry Promotes Bcl6 and Maf Expression to Orchestrate T Follicular Helper Differentiation.	Immunity	2019
29848492	Long genes linked to autism spectrum disorders harbor broad enhancer-like chromatin domains.	Genome Res	2018
28432132	Do Memory CD4 T Cells Keep Their Cell-Type Programming: Plasticity versus Fate Commitment? Epigenome: A Dynamic Vehicle for Transmitting and Recording Cytokine Signaling.	Cold Spring Harbor perspectives in biology	2018
30158954	A Cosine Similarity-Based Method to Infer Variability of Chromatin Accessibility at the Single-Cell Level.	Frontiers in Genetics	2018
30584433	Health-Related Quality of Life in Tehran Lipid and Glucose Study.	International Journal of Endocrinology and Metabolism	2018
29858286	Identification and characterization of HIV-specific resident memory CD8<sup>+</sup> T cells in human lymphoid tissue.	Sci Immunol	2018
29747652	Perceived social support and health-related quality of life (HRQoL) in Tehranian adults: Tehran lipid and glucose study.	Health and Quality of Life Outcomes	2018
29466756	Lineage-Determining Transcription Factor TCF-1 Initiates the Epigenetic Identity of T Cells.	Immunity	2018
28920956	Biotin tagging of MeCP2 in mice reveals contextual insights into the Rett syndrome transcriptome.	Nature Medicine	2017
28813652	GR Extinguishes Inflamed Chromatin, and NF-ÎºB Evacuates.	Immunity	2017
27789795	Epigenetic stability of exhausted T cells limits durability of reinvigoration by PD-1 blockade.	Science	2016
28713870	IL-10 induces a STAT3-dependent autoregulatory loop in T<sub>H</sub>2 cells that promotes Blimp-1 restriction of cell expansion via antagonism of STAT5 target genes.	Sci Immunol	2016
27435189	Targeted genomic analysis reveals widespread autoimmune disease association with regulatory variants in the TNF superfamily cytokine signalling network.	Genome Med	2016
26750311	Interleukin-23-Induced Transcription Factor Blimp-1 Promotes Pathogenicity of T Helper 17 Cells.	Immunity	2016
27423869	Exploiting Chromatin Biology to Understand Immunology.	Methods in Enzymology	2016