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Author Details

Gregory Humphrey
University of California
2013
63
32
PMIDPaper TitleJournal TitlePublished Year
36862087Bacterial and Chemical Evidence of Coastal Water Pollution from the Tijuana River in Sea Spray Aerosol.Environ Sci Technol2023
37650862Correction: A prebiotic diet modulates microglial states and motor deficits in α-synuclein overexpressing mice.Elife2023
37119735Gut microbiome and atrial fibrillation-results from a large population-based study.EBioMedicine2023
36722970The Molecular Effect of Wearing Silver-Threaded Clothing on the Human Skin.mSystems2023
36691982Integrated Multi-Cohort Analysis of the Parkinson's Disease Gut Metagenome.Mov Disord2023
36649143Stability of the Fecal and Oral Microbiome over 2 Years at -80°C for Multiple Collection Methods.Cancer Epidemiol Biomarkers Prev2023
35076975Predicting fungal infection rate and severity with skin-associated microbial communities on amphibians.Mol Ecol2022
35411350Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission.medRxiv2022
35378331The Host-Microbiome Response to Hyperbaric Oxygen Therapy in Ulcerative Colitis Patients.Cell Mol Gastroenterol Hepatol2022
35798960Enhancing untargeted metabolomics using metadata-based source annotation.Nat Biotechnol2022
35798029Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission.Nature2022
35713407A comparison of six DNA extraction protocols for 16S, ITS and shotgun metagenomic sequencing of microbial communities.Biotechniques2022
36346385A prebiotic diet modulates microglial states and motor deficits in α-synuclein overexpressing mice.Elife2022
35087228Multi-omics analyses of the ulcerative colitis gut microbiome link Bacteroides vulgatus proteases with disease severity.Nat Microbiol2022
33418911A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria.Mar Drugs2021
33853672Assessment of the microbiome during bacteriophage therapy in combination with systemic antibiotics to treat a case of staphylococcal device infection.Microbiome2021
33906915Evaluation of the Effect of Storage Methods on Fecal, Saliva, and Skin Microbiome Composition.mSystems2021
33512248A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities.Biotechniques2021
34020448Associations of healthy food choices with gut microbiota profiles.Am J Clin Nutr2021
33941606Erratum: Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information.Genome Res2021
34103074SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment.Microbiome2021
33976176Taxonomic signatures of cause-specific mortality risk in human gut microbiome.Nat Commun2021
33026068Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity.Inflamm Bowel Dis2021
32540955Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information.Genome Res2020
32047925The effect of legume supplementation on the gut microbiota in rural Malawian infants aged 6 to 12 months.Am J Clin Nutr2020
32103176Global chemical effects of the microbiome include new bile-acid conjugations.Nature2020
31911491Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats.mBio2020
33200135A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities.bioRxiv2020
33051377Reduced Independence in Daily Living Is Associated with the Gut Microbiome in People with HIV and HCV.mSystems2020
33236030Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment.medRxiv2020
32691653Association Between the Gut Microbiota and Blood Pressure in a Population Cohort of 6953 Individuals.J Am Heart Assoc2020
32576651High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy.mSystems2020
32994287Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome.mSystems2020
32880630Type I IFNs and CD8 T cells increase intestinal barrier permeability after chronic viral infection.J Exp Med2020
32991841Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans.Cell2020
32958643CD8 T cells drive anorexia, dysbiosis, and blooms of a commensal with immunosuppressive potential after viral infection.Proc Natl Acad Sci U S A2020
32184365Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome.mSystems2020
30760325Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome.Microbiome2019
31672156Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads.Genome Biol2019
29995839Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes.ISME J2019
31239396Quantifying and Understanding Well-to-Well Contamination in Microbiome Research.mSystems2019
31551401Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis.mSystems2019
31189482The impact of skin care products on skin chemistry and microbiome dynamics.BMC Biol2019
30926798A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease.Nat Commun2019
31124709Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary.Biotechniques2019
30801026Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease.mSystems2019
31058230Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems.mSystems2019
30822347The genetic basis for adaptation of model-designed syntrophic co-cultures.PLoS Comput Biol2019
29795809American Gut: an Open Platform for Citizen Science Microbiome Research.mSystems2018
29896566Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome.mSystems2018
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Collaborators

Rob Knight
University of California
Co-authored papers 49
Gail Ackermann
University of California San Diego
Co-authored papers 28
Pieter C Dorrestein
Co-authored papers 22
Daniel McDonald
University of California San Diego
Co-authored papers 14
Austin D Swafford
Center for Microbiome Innovation, University of California San Diego
Co-authored papers 13
Pedro Belda-Ferre
University of California San Diego
Co-authored papers 12
Clarisse Marotz
University of California San Diego
Co-authored papers 11
Yoshiki V??zquez-Baeza
Center for Microbiome Innovation, University of California San Diego
Co-authored papers 10
Jack A Gilbert
Scripps Institution of Oceanography, University of California San Diego
Co-authored papers 9
Cameron Martino
Center for Microbiome Innovation, University of California San Diego
Co-authored papers 9
Justin P Shaffer
University of California San Diego
Co-authored papers 9
Qiyun Zhu
Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University
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Antonio Gonzalez
University of California San Diego School of Medicine
Co-authored papers 6
Pavel A Pevzner
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Co-authored papers 5
Mingxun Wang
Co-authored papers 5
Aki S Havulinna
Co-authored papers 4
William J Sandborn
University of California San Diego
Co-authored papers 4
Pekka Jousilahti
Co-authored papers 4
Stefan Janssen
Co-authored papers 4
Brigid S Boland
University of California
Co-authored papers 4
Nuno Bandeira
University of California
Co-authored papers 4
Parambir S Dulai
Feinberg School of Medicine Northwestern University
Co-authored papers 4
Luke R Thompson
Northern Gulf Institute, Mississippi State University
Co-authored papers 4
David J Gonzalez
Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California
Co-authored papers 4
Larry Smarr
Co-authored papers 4
Veikko Salomaa
Co-authored papers 4
Michael Inouye
Co-authored papers 4
John T Chang
University of California San Diego
Co-authored papers 4
Mohit Jain
Cumming School of Medicine, University of Calgary, 0 Hospital Drive NW
Co-authored papers 3
Alan K Jarmusch
Co-authored papers 3
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