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Author Details

Lorenzo Calviello
Functional Genomics Research Centre, Italy Computational Biology Research Centre
2013
17
12
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37314931Compromised nonsense-mediated RNA decay results in truncated RNA-binding protein production upon DUX4 expression.Cell Rep2023
37214951A ubiquitous GC content signature underlies multimodal mRNA regulation by DDX3X.bioRxiv2023
35831657Standardized annotation of translated open reading frames.Nat Biotechnol2022
33622983Control of ribosomal protein synthesis by the Microprocessor complex.Sci Signal2021
33765284Genome-Wide Analysis of Actively Translated Open Reading Frames Using RiboTaper/ORFquant.Methods Mol Biol2021
33905506DDX3 depletion represses translation of mRNAs with complex 5' UTRs.Nucleic Acids Res2021
32157095Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes.Nat Commun2020
32601440Quantification of translation uncovers the functions of the alternative transcriptome.Nat Struct Mol Biol2020
32353859A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.Nature2020
31155234The Translational Landscape of the Human Heart.Cell2019
27870833Integrative classification of human coding and noncoding genes through RNA metabolism profiles.Nat Struct Mol Biol2017
28928394RNA localization is a key determinant of neurite-enriched proteome.Nat Commun2017
28887026Beyond Read-Counts: Ribo-seq Data Analysis to Understand the Functions of the Transcriptome.Trends Genet2017
27791167Super-resolution ribosome profiling reveals unannotated translation events in <i>Arabidopsis</i>.Proc Natl Acad Sci U S A2016
26657557Detecting actively translated open reading frames in ribosome profiling data.Nat Methods2016
26364619Extensive identification and analysis of conserved small ORFs in animals.Genome Biol2015
23815522Quasi-cellular systems: stochastic simulation analysis at nanoscale range.BMC Bioinformatics2013
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Collaborators

Uwe Ohler
Humboldt University
Co-authored papers 10
Stephen N Floor
University of California san francisco
Co-authored papers 5
Srivats Venkataramanan
Management and Science University
Co-authored papers 4
Norbert H??bner
Max Delbruck Center for Molecular Medicine in the Helmholtz Association (MDC)
Co-authored papers 2
Danish Memon
European Bioinformatics Institute
Co-authored papers 1
Daniel J Saltzberg
University of California san francisco
Co-authored papers 1
Julia Noack
University of California san francisco
Co-authored papers 1
Chuwen Lin
Cardiovascular Research Institute, University of California san francisco
Co-authored papers 1
Maya Modak
Quantitative Biosciences Institute (QBI), University of California San Francisco
Co-authored papers 1
Wei-Chiang Shen
Suzhou Institute of Nano-Tech and Nano-Bionics (SINANO), Chinese Academy of Sciences
Co-authored papers 1
Sabrina Johanna Fletcher
Institute of Biology and Experimental Medicine (IBYME)
Co-authored papers 1
Mathieu Hubert
Institut Pasteur
Co-authored papers 1
Markus Müller
Co-authored papers 1
Melanie J Bennett
Quantitative Biosciences Institute (QBI), University of California San Francisco
Co-authored papers 1
Djoshkun Shengjuler
Institut Pasteur
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Sebastian Schafer
Co-authored papers 1
Hannes Braberg
University of California San Francisco
Co-authored papers 1
Yiming Cai
Institute of Mental Health and Woodbridge Hospital
Co-authored papers 1
Barbara Celona
Cardiovascular Research Institute, University of California san francisco
Co-authored papers 1
John R Prensner
University of Michigan ann arbor
Co-authored papers 1
Alan D Frankel
University of California san francisco
Co-authored papers 1
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 1
Christine E Seidman
Brigham and Women's Hospital (Y.K.
Co-authored papers 1
Eric Verdin
Buck Institute for Research on Aging
Co-authored papers 1
Danica Galoni?? Fujimori
University of California San Francisco
Co-authored papers 1
Davide Ruggero
University of California San Francisco
Co-authored papers 1
Yucheng T Yang
Co-authored papers 1
Ying Shi
Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences
Co-authored papers 1
Phillip P Sharp
University of California san francisco
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David A Agard
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