Author details

Full Name

Zhenqiang Su

Affiliation

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
34980216	Assessing reproducibility of inherited variants detected with short-read whole genome sequencing.	Genome Biol	2022
33140861	Blood molecular markers associated with COVID-19 immunopathology and multi-organ damage.	EMBO J	2020
29722920	Prognostic relevance and performance characteristics of serum IGFBP-2 and PAPP-A in women with breast cancer: a long-term Danish cohort study.	Cancer Medicine	2018
28849567	ArrayTrack: An FDA and Public Genomic Tool.	Methods Mol Biol	2017
26690529	Comparing genetic variants detected in the 1000 genomes project with SNPs determined by the International HapMap Consortium.	J Genet	2015
25384574	Quality control metrics improve repeatability and reproducibility of single-nucleotide variants derived from whole-genome sequencing.	Pharmacogenomics J	2015
25952319	Integrated microRNA, mRNA, and protein expression profiling reveals microRNA regulatory networks in rat kidney treated with a carcinogenic dose of aristolochic acid.	BMC Genomics	2015
26109056	Comparison of RNA-seq and microarray-based models for clinical endpoint prediction.	Genome Biol	2015
24875441	Toxicogenomics and cancer susceptibility: advances with next-generation sequencing.	Environmental Carcinogenesis and Ecotoxicology Reviews	2014
25633159	An investigation of biomarkers derived from legacy microarray data for their utility in the RNA-seq era.	Genome Biol	2014
25350283	Whole genome sequencing of 35 individuals provides insights into the genetic architecture of Korean population.	BMC Bioinformatics	2014
25977778	Transcriptomic profiling of rat liver samples in a comprehensive study design by RNA-Seq.	Sci Data	2014
25977777	Cross-platform ultradeep transcriptomic profiling of human reference RNA samples by RNA-Seq.	Sci Data	2014
25977771	Comprehensive RNA-Seq transcriptomic profiling across 11 organs, 4 ages, and 2 sexes of Fischer 344 rats.	Sci Data	2014
24448476	Exploring the FDA adverse event reporting system to generate hypotheses for monitoring of disease characteristics.	Clin Pharmacol Ther	2014
24510058	A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages.	Nat Commun	2014
25254650	Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures.	Nat Commun	2014
25150839	The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance.	Nat Biotechnol	2014
23393026	Critical role of bioinformatics in translating huge amounts of next-generation sequencing data into personalized medicine.	Sci China Life Sci	2013
23897986	EADB: an estrogenic activity database for assessing potential endocrine activity.	Toxicol Sci	2013
23393027	Studies on abacavir-induced hypersensitivity reaction: a successful example of translation of pharmacogenetics to personalized medicine.	Science China Life Sciences	2013
22112502	Identification of urinary microRNA profiles in rats that may diagnose hepatotoxicity.	Toxicological Sciences	2012
22970228	Technical reproducibility of genotyping SNP arrays used in genome-wide association studies.	PLoS One	2012
22573522	The liver toxicity biomarker study phase I: markers for the effects of tolcapone or entacapone.	Toxicol Pathol	2012
22817640	atBioNet--an integrated network analysis tool for genomics and biomarker discovery.	BMC Genomics	2012
22165958	Constructing a robust protein-protein interaction network by integrating multiple public databases.	BMC Bioinformatics	2011
21463242	Next-generation sequencing and its applications in molecular diagnostics.	Expert Rev Mol Diagn	2011
21834575	Comparing next-generation sequencing and microarray technologies in a toxicological study of the effects of aristolochic acid on rat kidneys.	Chem Res Toxicol	2011
20368714	Assessing sources of inconsistencies in genotypes and their effects on genome-wide association studies with HapMap samples.	Pharmacogenomics J	2010
20946615	An FDA bioinformatics tool for microbial genomics research on molecular characterization of bacterial foodborne pathogens using microarrays.	BMC Bioinformatics	2010
20946593	Evaluation of gene expression data generated from expired Affymetrix GeneChipÂ® microarrays using MAQC reference RNA samples.	BMC Bioinformatics	2010
20676074	The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.	Nat Biotechnol	2010
20505247	Evaluating variations of genotype calling: a potential source of spurious associations in genome-wide association studies.	J Genet	2010
19811677	Microarray platform consistency is revealed by biologically functional analysis of gene expression profiles.	BMC Bioinformatics	2009
19171931	The liver toxicity biomarker study: phase I design and preliminary results.	Toxicol Pathol	2009
19597796	ArrayTrack: an FDA and public genomic tool.	Methods Mol Biol	2009
20047490	The accurate prediction of protein family from amino acid sequence by measuring features of sequence fragments.	J Comput Biol	2009
18793455	The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies.	BMC Bioinformatics	2008
18793462	Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples.	BMC Bioinformatics	2008
18793473	Very Important Pool (VIP) genes--an application for microarray-based molecular signatures.	BMC Bioinformatics	2008
18564836	Mold(2), molecular descriptors from 2D structures for chemoinformatics and toxicoinformatics.	J Chem Inf Model	2008
17303535	Consensus analysis of multiple classifiers using non-repetitive variables: diagnostic application to microarray gene expression data.	Comput Biol Chem	2007
16964229	The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements.	Nat Biotechnol	2006
16026596	Microarray scanner calibration curves: characteristics and implications.	BMC Bioinformatics	2005
16026597	Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential.	BMC Bioinformatics	2005